genome.fa.s191.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold363
Parameters: 2 7 7 80 10 50 1000
Length:  774241

Tables:   1   2   3   4   

This is table  3  of  4  ( 365 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476892--476969	39	2.0	39	100	0	156	38	17	5	38	1.72
480710--480750	20	2.0	20	100	0	82	34	4	19	41	1.73
481017--481059	21	2.0	21	86	0	59	37	2	20	39	1.66
481573--481635	25	2.5	25	82	5	74	25	26	22	25	2.00
483174--483362	46	4.1	46	99	0	369	37	9	22	30	1.86
487790--487849	27	2.3	26	82	5	75	35	11	10	43	1.75
496289--496321	2	16.5	2	93	0	57	48	0	0	51	1.00
498132--498230	42	2.3	43	84	1	119	33	23	17	26	1.96
499773--499814	20	2.1	20	90	0	66	40	0	2	57	1.12
502169--502206	4	9.5	4	94	0	67	52	23	0	23	1.47
502384--502442	30	2.0	30	100	0	118	23	23	6	45	1.76
507609--507638	6	5.0	6	100	0	60	16	16	0	66	1.25
526877--527066	44	4.3	44	67	6	134	34	21	21	22	1.97
527094--527122	13	2.2	13	100	0	58	13	37	24	24	1.91
531866--531942	25	3.1	25	81	3	93	42	16	19	20	1.89
532247--532305	27	2.2	26	79	8	64	44	22	5	28	1.74
532842--532873	14	2.3	14	100	0	64	56	12	0	31	1.37
541218--541260	17	2.5	17	76	3	50	69	4	2	23	1.18
542543--542612	35	2.0	35	94	0	122	30	24	7	38	1.82
547176--547277	50	2.0	50	100	0	204	40	11	10	37	1.77
550763--550835	20	3.6	21	70	18	57	36	17	28	16	1.92
550768--550850	40	2.1	40	86	0	112	38	18	28	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550781--550879	40	2.5	39	81	6	108	33	19	27	20	1.96
554512--554547	4	8.8	4	87	6	54	50	0	5	44	1.25
557855--557960	41	2.6	41	83	3	133	36	16	26	20	1.93
564748--564809	28	2.2	28	85	0	79	45	1	0	53	1.10
564748--564821	28	2.6	28	80	2	67	47	1	0	51	1.09
569060--569117	28	2.0	29	83	9	75	27	0	10	62	1.28
569953--569992	9	4.4	9	93	0	71	42	22	10	25	1.84
570095--570138	18	2.4	18	92	0	70	15	2	40	40	1.60
570558--570619	20	3.3	19	76	12	65	24	3	8	64	1.36
573744--573777	11	3.1	11	95	0	59	26	8	29	35	1.87
583529--583578	25	2.0	24	88	3	73	56	2	2	40	1.22
583542--583588	21	2.4	21	82	10	55	57	4	0	38	1.18
594664--594721	19	3.0	19	84	2	71	58	5	0	36	1.20
599055--599107	19	2.7	21	80	16	60	39	1	3	54	1.29
605042--605089	17	2.8	17	100	0	96	54	12	12	20	1.70
609104--609161	28	2.1	28	100	0	116	32	27	15	24	1.95
619241--619392	46	3.3	46	95	0	277	30	19	15	34	1.93
630775--631114	44	7.7	44	89	1	441	29	21	25	23	1.99
630775--631152	132	2.9	130	81	7	415	30	21	24	24	1.99
633718--633761	21	2.1	21	95	0	79	45	20	6	27	1.76
634377--634422	20	2.3	20	88	0	65	21	32	0	45	1.52
634385--634430	20	2.3	20	84	0	56	23	23	0	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635112--635225	40	2.8	40	89	0	165	43	28	15	11	1.82
635856--635893	19	2.1	18	85	14	51	52	7	0	39	1.31
641676--641747	24	3.0	24	81	0	81	44	8	23	23	1.80
641893--641975	21	4.0	21	75	6	69	14	26	20	38	1.91
641833--641973	42	3.4	41	79	3	147	17	22	19	41	1.90
650022--650048	13	2.1	13	100	0	54	22	48	7	22	1.75
661566--661631	32	2.1	32	100	0	132	25	9	9	56	1.60
662210--662262	21	2.5	21	90	0	88	28	20	24	26	1.99
662572--662810	41	5.8	41	88	0	343	21	20	28	29	1.98
663156--663190	15	2.4	14	86	9	52	22	0	37	40	1.55
663377--663549	21	8.2	21	81	1	175	20	0	31	47	1.55
663377--663531	7	22.0	7	83	1	175	20	0	31	48	1.50
663377--663580	14	14.4	14	77	5	151	19	0	34	45	1.54
663509--663600	29	3.2	28	81	7	87	19	1	40	39	1.59
663547--663598	7	7.3	7	76	4	50	19	0	44	36	1.51
663544--663596	22	2.4	23	81	9	65	18	0	47	33	1.49
663632--663673	6	6.7	6	86	8	57	80	4	0	14	0.86
664323--664462	35	3.8	36	89	4	192	6	23	9	60	1.50
665179--665212	7	4.9	7	96	0	59	0	11	29	58	1.33
671607--671648	15	2.7	16	82	14	52	45	0	2	52	1.13
671598--671639	15	2.9	15	82	10	52	47	0	0	52	1.00
671862--671898	16	2.3	16	95	0	65	29	27	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675253--675332	42	1.9	42	86	0	115	22	12	32	32	1.91
675329--675369	23	1.9	22	85	14	59	26	14	29	29	1.95
677613--677659	22	2.0	23	88	8	69	38	0	6	55	1.26
685200--685242	18	2.4	18	92	0	68	25	25	6	41	1.80
688780--689303	125	4.2	125	89	2	737	28	16	16	38	1.90
689369--689498	34	3.9	32	81	10	145	45	13	1	39	1.53
690043--690112	28	2.5	28	100	0	140	38	14	0	47	1.44
690354--690391	9	3.7	10	86	13	51	28	0	7	63	1.23
690353--690391	19	2.0	21	90	10	64	28	0	7	64	1.21
690437--690477	3	13.3	3	89	5	64	31	0	4	63	1.15
690476--690519	3	14.7	3	100	0	88	0	0	31	68	0.90
691366--691410	18	2.5	18	77	0	54	28	8	46	15	1.76
697019--697081	28	2.1	30	81	18	71	0	30	0	69	0.88
697043--697145	21	5.3	18	70	23	59	0	30	0	69	0.88
697026--697157	44	3.1	42	77	18	132	0	33	0	66	0.92
697073--697182	4	26.5	4	73	21	68	0	33	0	66	0.92
697018--697166	33	4.5	34	71	22	86	0	32	0	67	0.91
697078--697186	37	2.9	37	80	16	111	0	35	0	64	0.94
697042--697162	40	3.1	39	80	15	153	0	31	0	68	0.90
697061--697189	18	6.8	19	77	14	99	0	35	0	64	0.94
697217--697290	27	2.7	27	93	2	121	17	28	27	27	1.98
697362--697432	28	2.5	29	90	6	110	45	0	16	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697538--697576	9	4.2	9	86	3	51	28	0	0	71	0.86
698621--698655	19	1.9	19	88	11	56	17	11	5	65	1.43
699672--699699	6	4.7	6	100	0	56	14	17	0	67	1.22
701394--701724	114	2.9	114	83	8	392	24	21	25	28	1.99
702042--702124	35	2.3	35	77	2	85	26	3	26	43	1.71
703013--703601	306	1.9	305	98	0	1142	23	20	21	33	1.97
712864--712897	14	2.4	14	100	0	68	11	8	23	55	1.63
713457--713488	7	4.6	7	100	0	64	46	40	0	12	1.42
713466--713522	28	2.0	28	83	6	71	36	31	10	21	1.87
713760--713816	21	2.7	21	81	5	53	52	1	1	43	1.21
715203--715262	31	2.0	30	83	9	77	45	8	10	36	1.68
723410--723447	13	2.7	14	84	12	51	63	2	10	23	1.39
731171--731212	20	2.1	20	82	8	50	66	2	7	23	1.28
731888--731932	3	15.0	3	81	9	56	64	2	2	31	1.18
731885--731930	24	1.9	24	90	0	74	65	2	2	30	1.16
736938--737092	75	2.1	75	98	0	301	34	16	23	25	1.95
738810--738887	27	3.0	27	79	7	72	32	8	24	34	1.86
746634--746772	48	2.8	48	81	4	152	23	29	19	27	1.98
746751--746891	49	2.8	51	77	12	148	19	23	21	36	1.95
748345--748384	14	2.9	14	84	0	53	32	7	17	42	1.77
748368--748407	20	2.0	20	90	0	62	27	10	12	50	1.72
748353--748419	34	1.9	35	90	3	109	31	8	13	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748347--748423	14	5.0	15	71	20	52	32	9	15	42	1.78
748538--748579	21	2.0	21	85	0	57	35	21	9	33	1.86
752952--753028	35	2.2	37	79	11	90	45	1	2	50	1.23
753199--753243	16	2.8	16	96	0	81	26	33	0	40	1.57
756689--756749	32	1.9	32	93	0	104	34	3	27	34	1.73
764749--764845	32	3.3	31	66	19	89	44	18	3	34	1.66
767589--767630	6	6.8	6	97	2	75	83	0	16	0	0.65
768634--768681	15	3.4	15	72	16	57	25	27	35	12	1.92
768819--768870	3	18.3	3	84	11	74	63	0	36	0	0.95
768807--768875	14	4.6	16	87	10	60	63	0	36	0	0.94

Tables:   1   2   3   4