Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold344
Parameters: 2 7 7 80 10 50 1000
Length:  528373

Tables:   1   2   

This is table  2  of  2  ( 158 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351023--351051
13
2.2
13
100
0
58
34
10
6
48
1.64
373652--373710
29
2.1
27
81
12
66
23
6
1
67
1.24
373891--373930
12
3.6
11
83
9
55
82
10
7
0
0.84
373891--373988
30
3.3
30
84
9
123
76
10
12
1
1.07
373912--373988
28
2.7
29
89
4
120
74
10
14
1
1.14
373926--373969
22
1.9
24
86
9
65
72
9
15
2
1.19
383665--383935
41
6.5
41
79
5
242
27
17
24
30
1.97
383665--383906
82
2.9
83
83
3
272
27
19
23
30
1.98
383704--383935
126
1.9
124
81
8
283
26
17
24
31
1.97
386181--386205
11
2.3
11
100
0
50
32
0
8
60
1.26
394024--394082
30
2.0
30
86
0
82
37
8
25
28
1.85
394309--394506
51
3.9
51
82
3
231
24
17
28
29
1.97
394501--394594
45
2.1
45
89
0
143
27
19
22
30
1.98
394639--394682
23
1.9
22
82
17
54
38
0
25
36
1.56
397066--397308
127
1.9
127
96
0
450
20
11
16
51
1.76
400587--400752
55
3.0
55
61
16
126
21
22
30
25
1.99
402271--402558
40
7.2
40
92
0
459
35
16
32
15
1.90
405322--405384
27
2.3
27
88
0
99
33
19
14
33
1.91
411067--411123
24
2.3
25
85
8
82
35
3
0
61
1.13
413338--413409
24
3.0
23
80
13
74
34
2
2
59
1.26
416260--416346
18
4.7
18
72
12
59
51
16
4
27
1.63
416258--416346
38
2.4
38
81
7
103
52
15
4
26
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
416682--417194
247
2.0
254
84
5
675
42
11
10
35
1.76
435700--435858
38
4.1
38
79
10
144
33
10
10
45
1.72
435817--435880
28
2.4
26
78
14
69
32
12
10
43
1.77
439410--439449
21
1.9
21
85
10
55
42
22
17
17
1.89
442854--442995
63
2.3
62
85
4
182
26
13
13
47
1.79
446705--446784
32
2.5
32
91
2
135
17
17
31
33
1.93
446705--446813
32
3.5
31
81
7
105
21
15
32
31
1.94
451999--452050
24
2.1
24
85
3
68
26
9
9
53
1.64
453393--453439
20
2.3
20
85
7
60
25
17
29
27
1.97
463040--463085
21
2.1
22
84
4
58
67
2
23
6
1.25
472731--472853
50
2.4
52
74
9
126
43
12
11
32
1.78
473300--473466
82
2.0
83
97
2
318
49
7
28
14
1.69
478254--478294
14
2.8
14
85
7
55
75
0
2
21
0.92
479990--480049
26
2.3
26
97
0
111
35
18
11
35
1.87
484506--484566
30
2.0
30
100
0
122
27
9
26
36
1.88
495266--495462
28
7.0
28
100
0
394
39
17
17
25
1.92

Tables:   1   2

The End!