genome.fa.s2250.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold370
Parameters: 2 7 7 80 10 50 1000
Length:  805812

Tables:   1   2   3   

This is table  2  of  3  ( 259 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412024--412235	108	2.0	108	95	0	379	29	7	41	21	1.80
415255--415297	2	21.5	2	100	0	86	0	48	0	51	1.00
421692--421719	3	9.3	3	100	0	56	67	0	32	0	0.91
422803--422965	81	2.0	82	98	1	319	39	9	17	33	1.82
422825--422991	81	2.1	80	82	4	201	46	10	15	28	1.78
425652--425694	22	2.0	22	81	9	52	58	4	0	37	1.19
425709--425741	16	2.0	17	94	5	59	60	0	0	39	0.97
425710--425747	17	2.2	17	86	9	51	65	0	0	34	0.93
429209--429262	28	2.0	28	85	3	74	18	11	9	61	1.55
434911--435684	394	2.0	384	84	4	989	38	18	14	28	1.90
442399--442439	16	2.6	17	81	11	52	36	2	0	60	1.10
449495--449683	60	3.1	60	82	6	204	23	13	13	49	1.77
449495--449602	31	3.5	31	68	14	80	23	11	12	52	1.71
449516--449670	61	2.6	60	84	6	190	22	14	11	50	1.75
450115--450206	31	3.0	31	87	1	114	41	5	20	32	1.75
452045--452147	54	1.9	54	88	4	154	42	8	14	33	1.77
452527--452590	26	2.4	27	75	14	71	31	4	25	39	1.76
460503--460585	39	2.0	42	90	6	136	48	12	10	28	1.74
473402--473465	30	2.1	31	85	2	85	31	15	12	40	1.85
476090--476149	30	2.0	31	93	3	104	33	13	3	50	1.58
479755--479794	21	1.9	21	100	0	80	27	20	5	47	1.70
482232--482282	3	17.0	3	100	0	102	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483351--483385	6	5.8	6	100	0	70	51	0	14	34	1.42
491187--491243	27	2.1	27	83	3	71	28	1	5	64	1.25
494624--495016	138	2.8	146	81	10	416	40	6	5	47	1.52
494703--495016	138	2.3	138	89	2	481	40	7	5	46	1.54
499573--499626	19	3.1	18	76	7	58	22	3	5	68	1.26
505873--505933	29	2.1	30	82	8	74	52	3	1	42	1.27
507162--507208	23	2.0	24	83	8	60	61	0	8	29	1.25
507476--507529	23	2.3	23	90	9	83	46	1	0	51	1.11
507801--508062	125	2.1	126	97	1	499	39	6	5	48	1.51
519913--519951	20	2.0	20	90	10	62	25	12	2	58	1.47
521291--521333	22	2.0	22	85	0	59	11	4	11	72	1.27
524925--524961	3	12.3	3	100	0	74	64	0	0	35	0.94
525107--525167	29	2.1	29	81	6	70	55	0	1	42	1.09
525913--525958	3	15.3	3	100	0	92	32	0	0	67	0.91
526779--526811	14	2.4	14	100	0	66	12	6	12	69	1.35
537789--537827	18	2.2	18	86	9	53	66	2	0	30	1.05
538248--538293	6	7.7	6	100	0	92	32	32	34	0	1.58
542332--542382	24	2.1	24	82	7	59	5	23	1	68	1.22
541892--542421	263	2.0	263	94	2	924	32	16	6	44	1.72
549076--549160	21	3.9	23	80	11	108	36	24	22	16	1.94
549076--549160	44	2.0	41	86	6	116	36	24	22	16	1.94
549454--549488	3	11.7	3	93	0	61	62	0	2	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550159--550205	19	2.6	18	83	6	51	2	23	8	65	1.31
554883--554934	20	2.6	20	81	0	50	34	36	9	19	1.84
555786--555839	19	2.9	19	76	13	58	59	5	5	29	1.43
562287--562412	62	2.0	62	95	3	227	26	20	22	30	1.98
562390--562460	25	2.8	25	89	4	99	16	22	22	38	1.93
563795--563855	30	2.0	30	90	0	95	37	16	1	44	1.58
564120--564170	24	2.1	24	82	7	59	5	23	1	68	1.22
570562--570604	20	2.1	21	79	12	54	39	39	6	13	1.72
570569--570647	20	3.9	19	72	9	68	36	37	7	17	1.79
572492--572529	19	2.0	19	90	10	60	57	2	2	36	1.26
577941--578027	43	2.0	44	97	2	167	37	13	16	32	1.88
582271--582317	24	2.0	24	86	0	67	31	4	17	46	1.67
589700--589729	15	2.1	14	93	6	51	90	0	10	0	0.47
590993--591467	89	5.3	89	90	2	684	32	15	22	29	1.95
590984--591467	179	2.7	178	90	1	727	33	15	22	28	1.94
592325--592371	23	2.0	23	84	8	60	59	2	31	6	1.34
592422--592468	24	1.9	24	83	12	60	17	4	0	78	0.90
598775--598961	103	1.8	100	83	8	243	53	16	2	27	1.56
600723--600765	21	2.0	21	86	0	59	44	4	20	30	1.72
600850--600910	31	2.0	31	93	0	104	26	9	24	39	1.86
610334--610369	17	2.1	17	94	0	63	27	0	19	52	1.46
611592--611822	46	5.0	46	92	2	374	37	8	24	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613551--613608	30	1.9	30	92	0	98	17	41	29	12	1.85
619324--619368	6	7.5	6	100	0	90	33	15	17	33	1.92
619372--619397	12	2.2	12	100	0	52	19	15	34	30	1.93
625798--625824	6	4.5	6	100	0	54	33	14	18	33	1.92
630528--630568	20	2.0	20	95	0	73	36	9	31	21	1.86
652813--652884	29	2.5	30	77	8	78	37	4	0	58	1.18
656342--656539	90	2.2	91	86	3	274	32	18	10	37	1.85
656589--656628	19	2.0	20	85	4	55	55	0	0	45	0.99
656620--656667	9	5.2	9	78	12	53	72	2	2	22	1.05
656620--656669	18	2.7	18	87	3	73	70	2	2	26	1.09
656636--656696	18	3.3	18	79	4	77	67	3	3	26	1.22
656609--656675	27	2.6	25	76	4	62	67	1	2	28	1.14
656620--656676	18	3.2	16	76	16	51	68	1	3	26	1.15
656663--656785	30	4.1	30	76	14	121	60	1	7	30	1.34
656627--656735	10	11.3	10	68	21	63	66	1	4	27	1.22
656636--656767	59	2.3	60	82	8	159	62	2	5	29	1.29
656689--656828	29	4.8	28	67	22	74	58	2	8	30	1.40
656911--657079	87	1.9	88	82	7	211	34	9	17	38	1.82
660332--660408	40	1.9	40	84	5	102	57	3	6	32	1.43
660510--660561	24	2.2	24	82	0	59	51	5	7	34	1.54
660776--660810	3	11.3	3	87	6	52	62	0	2	34	1.10
660778--660803	13	2.0	13	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663867--663922	27	2.1	27	96	0	103	42	5	28	23	1.76
670051--670121	33	2.2	33	82	10	83	15	19	33	30	1.93
672295--672325	6	5.2	6	96	0	53	16	51	12	19	1.76
673012--673087	33	2.3	33	81	4	82	17	19	31	31	1.95
688727--688764	2	19.5	2	89	5	60	47	2	0	50	1.15
692176--693716	48	32.1	48	78	7	1031	20	3	48	27	1.67
693284--693359	21	3.3	21	70	19	71	21	3	53	21	1.61
693498--693759	144	1.8	144	91	0	434	17	6	46	29	1.73
693799--693887	36	2.5	36	86	0	115	23	10	42	23	1.84
693775--694046	150	1.8	150	95	0	490	23	9	39	27	1.85
693958--694037	36	2.2	36	86	0	106	23	8	41	26	1.83
695160--695282	24	5.1	24	65	18	76	20	1	47	30	1.59
695157--695573	147	2.9	147	79	6	391	18	2	47	30	1.63
695161--695759	48	12.4	48	77	3	511	19	3	47	30	1.64
695308--695759	27	18.6	27	64	23	112	19	2	48	29	1.64
695356--695759	144	2.8	144	88	1	592	19	3	47	29	1.65
695669--695750	21	3.6	21	71	17	74	20	0	52	26	1.47
695743--695997	42	5.8	42	76	11	260	18	14	34	32	1.91
695785--696085	137	2.2	138	96	0	559	20	12	36	30	1.90
696009--696097	27	3.5	26	69	17	71	28	5	44	21	1.74
695743--696227	48	10.6	45	76	9	263	20	12	36	30	1.89
707120--707612	263	1.9	261	85	3	690	35	16	13	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711862--711906	24	1.9	23	81	4	54	33	4	17	44	1.69
717176--717208	13	2.4	14	85	10	50	45	0	0	54	0.99
721638--721698	31	2.0	31	84	12	81	32	13	6	47	1.68
724411--724449	20	2.0	20	94	0	69	64	0	0	35	0.94
731124--731150	12	2.2	12	100	0	54	33	37	0	29	1.58
733805--733841	16	2.3	16	90	0	56	62	0	2	35	1.10
751688--751806	44	2.7	44	77	11	120	31	22	14	31	1.94
751985--752043	29	2.0	29	86	0	82	30	20	27	22	1.98
751914--752130	116	1.9	116	89	0	335	27	23	23	25	2.00
752014--752188	87	2.0	87	90	0	278	26	25	20	28	1.99

Tables:   1   2   3