genome.fa.s2356.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold131
Parameters: 2 7 7 80 10 50 1000
Length:  1240061

Tables:   1   2   3   4   

This is table  2  of  4  ( 392 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482878--482928	25	2.0	26	81	11	61	64	7	0	27	1.21
482896--482947	17	2.7	19	75	24	56	59	5	0	34	1.21
497492--497525	12	2.8	12	86	0	50	82	0	11	5	0.83
502205--502645	243	1.8	243	91	1	740	27	17	18	36	1.94
509023--509190	82	2.0	83	98	1	329	50	8	5	36	1.56
509477--509519	23	1.9	23	90	4	70	39	2	4	53	1.34
510966--510993	2	14.0	2	100	0	56	50	0	0	50	1.00
512633--512802	75	2.3	75	92	0	286	23	24	19	32	1.98
512633--512803	26	6.9	23	74	15	121	23	24	19	32	1.98
517064--517113	21	2.4	21	83	12	59	24	0	8	68	1.16
518422--518446	13	1.9	13	100	0	50	20	0	8	72	1.10
523086--523135	24	2.1	24	100	0	100	44	12	4	40	1.60
542297--542339	22	2.0	22	81	9	52	58	4	0	37	1.19
542314--542385	29	2.4	30	84	11	103	66	0	2	30	1.06
546481--546520	16	2.5	17	80	12	57	32	0	2	65	1.06
546607--546697	33	2.9	32	78	15	93	63	3	0	32	1.10
547845--547887	19	2.3	19	84	11	54	58	4	4	32	1.39
554687--554747	11	5.3	11	72	16	52	32	0	3	63	1.10
554711--554742	14	2.4	13	90	10	55	25	0	0	75	0.81
557727--557796	36	1.9	36	97	0	131	17	32	22	27	1.96
559049--559097	26	1.9	25	91	4	80	24	26	16	32	1.96
563929--563961	13	2.5	14	90	9	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567559--567606	11	4.4	11	81	0	51	12	27	6	54	1.61
569701--569993	123	2.4	120	87	6	426	35	37	11	14	1.83
571901--571939	15	2.5	16	88	12	55	15	12	28	43	1.83
600159--600577	208	2.0	210	90	1	653	30	19	15	35	1.92
610777--610802	13	2.0	13	100	0	52	38	23	15	23	1.92
626025--626135	51	2.2	51	86	3	152	32	16	7	44	1.75
628047--628075	14	2.1	14	100	0	58	58	13	6	20	1.58
630698--630740	21	2.0	22	81	4	52	58	18	6	16	1.60
633471--633519	24	2.0	24	100	0	98	32	8	36	22	1.84
641064--641131	31	2.2	31	92	5	111	45	5	11	36	1.65
641525--641573	24	2.0	24	84	11	64	73	6	4	16	1.19
643297--643339	3	14.3	3	100	0	86	32	0	0	67	0.91
644483--644542	18	3.6	17	78	17	56	60	3	3	33	1.30
646286--646314	2	15.0	2	92	7	51	48	0	0	51	1.00
646548--646594	21	2.1	23	84	7	62	25	6	6	61	1.44
657936--658048	29	3.9	28	85	9	138	34	19	5	40	1.74
657934--658058	30	4.3	29	85	3	144	36	19	4	39	1.73
658268--658308	21	2.0	21	85	0	55	78	0	21	0	0.76
658268--658295	12	2.3	12	100	0	56	85	0	14	0	0.59
658394--658438	3	15.0	3	90	0	72	66	0	33	0	0.92
658394--658466	15	5.0	15	85	8	73	72	0	27	0	0.85
658398--658473	6	12.2	6	87	6	55	76	0	23	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658434--658470	7	5.3	7	93	0	65	83	0	16	0	0.64
658401--658483	21	3.9	21	75	7	60	77	0	20	2	0.89
658578--658615	15	2.5	15	100	0	76	71	23	5	0	1.07
658776--658830	15	3.7	15	82	2	58	80	0	20	0	0.72
658776--658830	21	2.5	22	82	8	60	80	0	20	0	0.72
659175--659257	17	4.8	17	72	8	62	28	9	6	55	1.56
659379--659435	16	3.3	19	86	13	72	22	7	12	57	1.58
659323--659409	46	1.9	45	81	11	106	31	10	8	50	1.65
659405--659442	15	2.4	16	95	4	69	23	5	10	60	1.50
659284--659477	17	11.5	17	67	20	95	26	9	9	54	1.63
664295--664356	19	3.3	19	77	4	81	50	1	11	37	1.48
664743--664804	25	2.4	25	89	8	88	51	0	9	38	1.35
665364--665412	19	2.7	19	87	12	68	42	2	0	55	1.11
665364--665412	18	2.7	18	84	12	57	42	2	0	55	1.11
666769--666809	21	1.9	22	90	5	66	26	24	24	24	2.00
670839--671303	230	2.0	231	99	0	914	30	11	13	43	1.81
672309--672333	13	1.9	13	100	0	50	64	12	0	24	1.27
673908--673934	2	13.5	2	100	0	54	51	0	0	48	1.00
676383--676423	20	2.0	20	85	0	55	43	2	2	51	1.28
677644--677673	3	10.0	3	100	0	60	0	66	0	33	0.92
678800--679005	90	2.3	91	83	2	263	40	20	6	32	1.79
679226--679280	19	2.8	19	83	5	65	60	0	5	34	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679637--679857	90	2.5	88	82	5	275	33	10	22	33	1.89
691909--692268	178	2.0	179	99	0	713	41	11	13	33	1.81
696625--696659	3	11.7	3	100	0	70	34	31	0	34	1.58
700939--700980	19	2.3	19	84	12	52	23	0	7	69	1.13
701447--701511	29	2.2	29	94	0	112	33	16	15	33	1.91
702184--702240	27	2.1	27	83	3	71	66	3	1	28	1.18
702144--702240	26	3.7	26	72	13	83	62	5	2	29	1.28
708418--708443	3	8.7	3	100	0	52	69	0	0	30	0.89
713190--713219	3	10.0	3	100	0	60	33	0	0	66	0.92
722164--722200	13	2.8	14	84	12	51	45	0	0	54	1.00
725887--726069	89	2.1	89	97	0	348	18	17	7	56	1.64
730867--730900	18	1.9	17	88	5	50	38	0	0	61	0.96
735890--735943	27	2.0	27	85	10	74	57	7	7	27	1.53
736383--736536	59	2.6	59	79	9	165	50	14	12	22	1.77
742129--742190	31	2.0	31	96	0	115	40	35	4	19	1.73
742614--742679	31	2.1	31	83	5	80	37	7	16	37	1.77
742668--742723	29	1.9	29	81	0	67	41	10	12	35	1.78
743281--743318	19	2.1	19	85	5	51	55	0	5	39	1.23
743789--743867	33	2.4	33	82	14	85	55	0	3	40	1.18
749012--749726	359	2.0	359	99	0	1421	25	17	16	40	1.90
752874--752916	3	14.3	3	100	0	86	67	0	0	32	0.91
753042--753149	34	3.2	34	65	15	96	60	4	9	25	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752989--753195	68	3.0	68	100	0	414	57	7	8	26	1.54
755763--756104	173	2.0	173	88	4	512	33	22	14	29	1.94
759582--759606	11	2.3	11	100	0	50	36	8	0	56	1.29
760475--760514	20	2.0	20	90	0	62	50	12	10	27	1.72
760463--760529	34	1.9	35	90	3	109	46	13	8	31	1.74
760498--760537	14	2.9	14	84	0	53	42	17	7	32	1.77
763310--763359	20	2.6	19	83	3	64	20	4	4	72	1.18
771765--771811	1	47.0	1	100	0	94	0	0	0	100	0.00
771779--771877	52	1.9	52	87	2	146	1	5	17	76	1.01
772682--772916	115	2.0	116	96	0	436	34	12	18	34	1.88
774025--774067	24	1.9	21	86	13	59	41	6	4	46	1.51
777019--777086	35	1.9	35	88	5	102	45	10	8	35	1.69
779995--780149	75	2.1	76	97	1	294	36	7	5	50	1.52
787421--787509	38	2.2	41	83	13	107	50	6	5	37	1.52
792017--792062	18	2.7	16	81	15	56	58	8	0	32	1.28
796447--796504	21	2.7	23	84	7	68	58	13	15	12	1.63
799728--799874	74	2.0	74	90	0	231	16	12	31	39	1.86
816590--816648	26	2.3	26	77	16	68	16	10	0	72	1.10
816590--816650	17	3.6	16	72	14	50	18	9	0	72	1.11
830177--830201	6	4.2	6	100	0	50	52	0	32	16	1.44
834523--834622	50	2.0	50	94	0	173	33	12	19	36	1.88
836828--836874	22	2.1	22	88	0	67	27	29	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
841954--841991	13	2.9	13	88	0	58	39	23	10	26	1.87
857679--857799	60	2.1	57	81	6	136	45	13	11	29	1.78
859612--859690	38	2.1	39	97	2	151	53	5	2	39	1.37
860380--860422	18	2.3	19	80	8	52	32	2	2	62	1.20
861442--861552	53	2.1	53	84	1	141	20	17	23	38	1.93
872967--873011	20	2.3	20	82	14	58	68	0	0	31	0.89
872969--873015	21	2.2	20	88	7	67	70	0	0	29	0.88
872967--873014	18	2.5	20	78	21	57	68	0	0	31	0.90
873163--873207	20	2.3	20	82	14	58	68	0	0	31	0.89
873165--873211	21	2.2	20	88	7	67	70	0	0	29	0.88

Tables:   1   2   3   4