Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold131
Parameters: 2 7 7 80 10 50 1000
Length:  1240061

Tables:   1   2   3   4   

This is table  4  of  4  ( 392 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1143888--1143967
31
2.6
30
82
9
83
43
11
10
35
1.74
1143888--1143967
29
2.7
29
82
5
88
43
11
10
35
1.74
1149668--1149693
13
2.0
13
100
0
52
38
0
7
53
1.30
1177337--1177494
50
3.2
50
64
20
121
46
2
6
44
1.42
1177341--1177501
57
3.1
56
63
26
134
45
2
6
45
1.41
1177309--1177501
100
1.9
100
95
0
350
45
2
7
45
1.45
1178328--1178467
72
2.0
72
97
1
264
58
11
5
25
1.53
1183228--1183297
6
11.0
6
78
18
63
20
5
0
74
1.02
1183228--1183297
13
5.5
12
76
20
63
20
5
0
74
1.02
1183230--1183294
22
3.0
21
75
18
62
20
6
0
73
1.03
1183230--1183284
22
2.4
24
81
9
69
20
5
0
74
1.01
1187520--1187550
2
16.0
2
93
6
55
48
0
0
51
1.00
1189616--1189658
18
2.4
16
82
17
50
41
13
0
44
1.44
1190577--1190611
17
2.0
18
88
5
54
14
45
31
8
1.75
1196185--1196283
36
2.8
36
92
0
162
39
10
21
29
1.86
1197962--1198035
38
2.0
36
84
10
96
50
1
2
45
1.24
1198469--1198531
21
3.0
21
95
0
108
46
17
0
36
1.49
1199368--1199407
20
2.0
20
85
0
53
67
25
7
0
1.16
1200853--1200910
27
2.2
26
78
6
62
24
8
10
56
1.60
1204978--1205020
22
1.9
23
86
13
63
51
4
0
44
1.22
1206453--1206593
72
2.0
72
89
0
219
45
16
12
25
1.83
1206470--1206582
36
3.1
36
67
9
95
46
16
11
25
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1211712--1211778
30
2.2
30
86
0
89
20
25
37
16
1.93
1225109--1225141
6
5.5
6
100
0
66
33
15
0
51
1.43
1230930--1230983
23
2.2
23
83
9
72
64
0
3
31
1.11
1230960--1230997
19
2.0
20
84
5
51
65
2
2
28
1.19
1232154--1232183
14
2.1
15
93
6
53
20
0
33
46
1.51
1232753--1232795
22
2.0
22
90
0
68
16
11
13
58
1.64
1232827--1232885
30
2.0
30
96
0
109
28
5
13
52
1.61
1233821--1233859
11
3.5
11
93
6
62
20
35
0
43
1.52
1236375--1236446
22
3.3
22
80
3
83
44
40
1
13
1.53
1239361--1239405
22
2.0
22
95
0
81
57
11
13
17
1.64

Tables:   1   2   3   4

The End!