genome.fa.s248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold229
Parameters: 2 7 7 80 10 50 1000
Length:  751352

Tables:   1   2   

This is table  1  of  2  ( 211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
856--898	20	2.2	20	91	0	68	62	0	0	37	0.95
18278--18340	31	2.0	31	81	6	74	31	15	12	39	1.85
30883--30933	24	2.1	24	85	0	66	31	5	19	43	1.75
34280--34328	11	4.5	11	97	0	89	42	6	0	51	1.27
38167--38215	26	1.9	26	83	4	64	44	0	10	44	1.37
41263--41431	24	7.4	23	67	10	78	42	20	12	24	1.87
41231--41349	24	5.0	24	71	6	73	46	19	8	26	1.78
41238--41435	69	2.9	69	91	0	315	42	20	11	25	1.86
42932--42964	15	2.2	15	100	0	66	42	30	9	18	1.81
44187--44243	25	2.3	25	100	0	114	36	15	22	24	1.94
46806--46854	3	16.3	3	87	8	73	63	0	2	34	1.06
48511--48616	44	2.4	44	81	6	108	23	19	22	33	1.97
48944--49051	44	2.5	44	83	6	130	25	25	23	26	2.00
49218--49369	44	3.5	44	76	8	112	27	23	19	29	1.98
49345--49426	41	2.0	41	87	0	119	30	19	19	30	1.96
51049--51301	69	3.7	69	91	0	398	25	10	19	44	1.83
51162--51256	23	4.1	23	72	5	75	23	12	22	42	1.87
51052--51295	24	10.5	22	64	16	57	25	9	19	44	1.81
51062--51341	138	2.0	137	84	2	355	27	9	18	44	1.81
55476--55513	18	2.1	18	100	0	76	28	10	15	44	1.80
57785--57828	22	2.0	21	87	12	63	63	0	0	36	0.95
63777--63832	25	2.2	26	87	9	89	64	0	1	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63758--63832	30	2.7	27	86	12	91	61	0	2	36	1.10
70679--70712	2	17.0	2	100	0	68	50	0	0	50	1.00
72897--72936	21	1.9	21	94	0	71	42	15	25	17	1.88
74487--74532	4	11.5	4	95	0	83	47	23	0	28	1.52
81430--81471	22	1.9	22	85	0	57	64	11	2	21	1.38
81454--81519	31	2.1	32	83	8	82	60	15	0	24	1.35
84758--84790	15	2.2	15	94	0	57	60	12	9	18	1.57
87758--87783	3	8.7	3	100	0	52	69	0	0	30	0.89
92248--92285	17	2.3	17	90	4	60	39	7	10	42	1.69
103361--103391	16	2.0	15	93	6	53	35	6	12	45	1.68
117382--117428	19	2.5	19	96	0	85	53	10	10	25	1.68
121090--121115	13	2.0	13	100	0	52	38	23	23	15	1.92
122921--124504	790	2.0	791	99	0	3161	31	16	19	32	1.94
128428--128467	19	2.2	19	86	13	57	65	17	10	7	1.46
131016--131695	351	1.9	350	94	0	1191	26	10	18	44	1.83
143503--143644	71	2.0	71	100	0	284	43	12	9	33	1.76
144846--144921	38	2.0	38	100	0	152	15	18	26	39	1.91
150866--150952	43	2.0	43	89	8	133	22	2	11	63	1.39
155835--156013	20	8.9	20	65	12	55	54	2	5	38	1.35
155901--156013	40	2.8	39	82	10	120	48	1	5	44	1.35
156218--156288	10	6.9	10	72	10	54	45	1	2	50	1.25
156268--156397	9	13.1	10	69	17	51	35	4	2	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175359--175413	27	2.0	27	86	6	76	32	0	0	67	0.91
192453--192514	32	1.9	32	96	0	115	37	14	9	38	1.79
198270--198319	25	2.0	25	100	0	100	36	12	12	40	1.79
199816--199891	29	2.5	29	76	6	80	51	13	11	23	1.74
200216--200253	6	6.3	6	93	0	58	36	0	0	63	0.95
201497--201546	24	2.1	24	96	0	91	42	14	30	14	1.84
201569--201633	32	2.0	33	85	5	89	36	0	4	58	1.19
201566--201641	11	6.9	11	71	16	59	36	0	3	59	1.16
201569--201636	31	2.2	29	84	7	82	36	0	4	58	1.18
203612--203687	33	2.3	32	80	10	82	34	15	23	26	1.95
211435--211494	3	19.7	3	93	3	102	66	0	0	33	0.92
214679--214717	18	2.2	18	90	0	60	56	0	2	41	1.13
222410--222452	3	14.3	3	100	0	86	34	0	0	65	0.93
224022--224048	4	6.8	4	100	0	54	77	0	0	22	0.76
226783--226817	18	1.9	18	88	0	52	37	5	0	57	1.23
227817--227847	15	2.0	16	93	6	55	70	6	0	22	1.09
230059--230106	3	16.3	3	91	4	80	31	0	2	66	1.03
232605--232671	34	1.9	35	87	3	100	31	8	14	44	1.76
232761--232808	19	2.5	19	83	10	62	39	2	0	58	1.10
232763--232798	18	2.1	19	85	15	51	38	0	0	61	0.96
233291--233333	19	2.3	19	83	0	59	27	0	6	65	1.18
248201--248316	58	2.0	58	100	0	232	31	18	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255795--255831	19	2.0	18	89	5	56	62	2	2	32	1.23
264334--264387	23	2.3	23	87	0	72	25	18	11	44	1.83
264514--264544	2	15.5	2	100	0	62	51	0	48	0	1.00
266326--266384	28	2.1	29	84	6	77	59	0	5	35	1.20
266327--266374	23	2.0	25	84	8	64	58	0	2	39	1.10
272869--272925	23	2.7	21	74	12	62	38	0	3	57	1.16
277984--278040	26	2.2	26	81	6	62	42	1	8	47	1.45
284638--284699	27	2.2	28	82	2	72	20	8	25	45	1.79
287703--287729	6	4.5	6	100	0	54	29	0	70	0	0.88
287650--287870	110	2.0	110	94	3	392	19	8	41	30	1.81
287811--287839	6	4.8	6	100	0	58	31	0	68	0	0.89
288805--288854	11	4.7	11	82	7	59	0	34	0	66	0.92
288874--288899	1	26.0	1	100	0	52	0	0	0	100	0.00
294630--294800	43	4.0	43	100	0	342	42	4	18	35	1.70
302238--302277	2	21.0	2	90	10	66	47	0	0	52	1.00
305603--305635	9	3.7	9	100	0	66	63	0	0	36	0.95
308795--308886	44	2.0	45	83	8	116	34	21	5	38	1.77
318912--318945	11	3.2	11	87	8	52	70	8	0	20	1.13
319047--319399	155	2.3	155	98	0	688	32	9	5	53	1.54
321173--321197	3	8.3	3	100	0	50	68	0	0	32	0.90
327726--327942	108	2.0	108	98	0	416	40	15	11	32	1.83
329025--329080	27	2.1	27	100	0	112	39	16	10	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334698--334873	86	2.1	85	86	3	246	35	9	13	42	1.77
335819--335873	21	2.7	19	78	15	56	36	1	0	61	1.06
335819--335873	15	3.9	14	77	15	60	36	1	0	61	1.06
336370--336707	167	2.0	167	87	2	491	32	16	27	23	1.96
336912--336941	13	2.3	13	94	0	51	40	40	0	20	1.52
337084--337140	9	6.2	9	78	11	62	19	12	28	40	1.87
337501--337545	20	2.2	21	88	4	65	15	8	4	71	1.28
337503--337551	20	2.5	20	83	3	55	14	10	6	69	1.35
340453--340487	16	2.2	16	94	0	61	42	37	0	20	1.52
341371--341485	61	1.9	61	83	3	151	44	20	6	28	1.75
343052--343080	2	14.5	2	100	0	58	48	0	0	51	1.00
350013--350049	7	5.4	7	87	6	58	62	0	0	37	0.96
350012--350057	13	3.5	13	85	5	65	65	0	0	34	0.93
351693--351723	5	6.0	5	92	7	53	58	0	0	41	0.98
352147--352191	18	2.6	18	82	3	56	42	8	15	33	1.78
360875--360914	18	2.2	18	86	0	53	40	7	30	22	1.81
361732--361779	19	2.5	19	83	10	53	18	10	6	64	1.45
361765--361800	14	2.6	14	90	0	54	25	5	5	63	1.38
363911--363947	2	18.5	2	100	0	74	51	0	0	48	1.00
370399--370531	40	3.3	40	88	2	176	22	28	29	19	1.98
373167--373208	18	2.3	19	83	4	50	16	4	4	73	1.17
373205--373247	23	1.9	22	81	13	52	16	2	2	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373952--373985	17	2.0	17	88	11	52	47	0	2	50	1.16
375283--375333	21	2.5	20	80	3	57	37	25	21	15	1.93
376180--376258	39	2.0	39	97	0	149	35	17	13	32	1.90
376559--376630	5	14.2	5	77	13	58	56	4	0	38	1.18
377075--377277	103	2.0	103	99	0	397	36	10	6	45	1.66
377354--377415	21	2.8	22	85	9	81	56	0	1	41	1.09
377445--377514	24	2.9	24	81	8	63	55	4	2	37	1.34
377460--377540	24	3.4	23	79	17	78	58	6	2	33	1.36
378234--378260	14	1.9	14	100	0	54	14	0	33	51	1.43
378347--378394	24	2.0	25	83	4	62	68	6	6	18	1.32

Tables:   1   2