genome.fa.s248.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold229
Parameters: 2 7 7 80 10 50 1000
Length:  751352

Tables:   1   2   

This is table  2  of  2  ( 211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379349--379455	54	2.0	54	81	3	126	28	15	16	39	1.90
380563--380605	22	2.0	22	86	4	61	23	6	9	60	1.51
394216--394248	11	3.1	11	91	4	50	39	0	0	60	0.97
415250--415695	44	9.7	44	68	16	190	34	17	17	30	1.93
415221--415414	89	2.2	88	83	3	228	37	13	18	30	1.90
415294--415603	144	2.2	142	81	8	346	34	18	16	30	1.93
415915--415941	7	3.9	7	100	0	54	25	0	0	74	0.83
420410--420451	2	21.0	2	100	0	84	50	0	0	50	1.00
426602--426808	110	1.9	108	89	6	323	28	6	19	44	1.76
432689--432803	36	3.2	36	62	14	92	38	6	12	43	1.67
432670--432815	72	2.0	73	97	1	276	36	8	10	43	1.70
433352--433384	4	8.2	4	100	0	66	51	0	0	48	1.00
433526--433560	1	35.0	1	94	0	52	5	0	0	94	0.32
433526--433562	13	3.0	13	92	7	60	10	0	0	89	0.49
434437--434520	43	1.9	44	85	7	118	33	20	15	30	1.94
435615--435649	13	2.7	13	100	0	70	17	40	28	14	1.88
436424--436450	12	2.2	12	100	0	54	51	7	0	40	1.30
436570--436653	27	3.2	27	64	16	77	34	28	17	19	1.95
436570--436672	51	2.0	51	98	0	197	33	29	18	18	1.95
442232--442282	26	2.0	26	88	0	75	19	23	27	29	1.98
449979--450337	189	1.9	190	88	1	551	32	15	22	29	1.94
465072--465133	23	2.6	24	75	14	74	25	1	19	53	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468892--468937	24	2.0	21	84	12	56	34	0	2	63	1.07
477965--478822	392	2.2	392	97	0	1603	41	9	12	36	1.74
483679--483871	96	2.0	97	98	1	379	50	12	5	31	1.62
492201--492267	4	16.8	4	96	0	125	25	1	23	49	1.59
498708--498759	23	2.3	23	96	0	95	28	19	21	30	1.97
509955--509988	1	34.0	1	100	0	68	100	0	0	0	0.00
509822--510142	168	1.9	168	99	0	633	47	19	11	20	1.80
518519--518691	87	2.0	88	98	1	339	45	5	4	44	1.48
521299--521334	17	2.1	17	100	0	72	66	16	5	11	1.40
522225--522369	72	2.0	73	98	1	283	47	8	4	40	1.53
523895--523922	3	9.3	3	100	0	56	0	32	0	67	0.91
526408--526455	19	2.6	19	90	3	80	37	2	12	47	1.53
526458--526547	42	2.1	42	87	4	128	30	2	13	54	1.51
531092--531139	19	2.6	19	86	3	71	35	2	14	47	1.56
535659--535695	9	4.1	9	92	0	65	29	10	13	45	1.77
535750--535780	9	3.4	9	90	0	53	38	22	12	25	1.90
536171--536227	29	2.0	29	85	0	78	31	24	15	28	1.96
542431--542927	48	10.4	48	77	3	338	29	35	22	12	1.91
542459--542936	96	5.0	96	79	1	395	30	35	22	12	1.91
543092--543246	48	3.2	48	78	0	157	28	34	21	14	1.93
543326--543396	33	2.2	33	81	0	88	39	29	19	11	1.87
543367--543603	48	4.9	48	75	3	136	31	36	18	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557590--557691	28	3.7	28	76	2	89	16	33	22	27	1.96
557862--557902	5	8.2	5	100	0	82	78	0	0	21	0.76
560272--560492	72	3.1	72	97	1	408	38	18	21	22	1.94
562636--562740	54	1.9	54	88	0	156	41	18	5	34	1.74
574612--574653	21	2.0	20	86	13	59	45	4	0	50	1.23
574612--574651	20	2.0	20	85	9	55	45	5	0	50	1.23
577492--577538	3	15.7	3	100	0	94	31	0	0	68	0.90
578569--578840	145	1.9	145	94	3	485	41	15	16	26	1.88
579646--579690	18	2.4	18	81	3	54	62	0	4	33	1.15
579649--579724	30	2.5	30	83	12	86	61	0	5	32	1.18
579803--579836	14	2.3	15	95	5	61	58	2	0	38	1.13
581215--581412	106	1.9	106	87	2	290	30	17	13	38	1.87
584872--584911	22	1.9	22	85	10	57	37	7	2	52	1.43
590058--590198	72	2.0	72	82	2	176	40	11	21	26	1.87
596341--596438	44	2.3	42	81	8	108	27	18	23	30	1.98
610580--610738	72	2.2	72	85	4	214	41	16	17	24	1.89
612089--612118	13	2.4	13	94	5	53	26	40	3	30	1.72
613061--613115	28	1.9	29	85	3	76	60	5	3	30	1.37
613237--613409	43	4.0	43	100	0	346	44	13	9	32	1.76
613258--613441	86	2.1	84	85	7	228	49	13	8	28	1.71
620645--620739	42	2.3	42	90	0	145	40	3	16	40	1.65
624540--624592	21	2.5	21	90	0	79	28	37	11	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626363--626388	12	2.2	12	100	0	52	15	0	0	84	0.62
627120--627203	22	3.7	23	73	10	73	34	7	4	53	1.49
629121--629188	25	2.7	25	77	4	66	36	5	17	39	1.74
632760--632896	72	1.9	71	82	8	170	39	15	18	27	1.90
643690--643769	39	2.1	39	90	0	124	35	22	12	30	1.91
647723--647830	54	2.0	54	100	0	216	38	22	18	20	1.93
650316--650354	14	2.8	14	88	0	51	23	2	25	48	1.63
650350--650394	14	3.3	14	81	6	56	28	6	24	40	1.80
650336--650388	27	1.9	28	88	3	81	26	5	24	43	1.76
651011--651039	2	14.5	2	100	0	58	51	0	0	48	1.00
662795--662823	1	29.0	1	100	0	58	0	0	0	100	0.00
672015--672225	105	2.0	105	99	0	413	51	18	8	21	1.73
673198--673225	13	2.2	13	100	0	56	25	0	75	0	0.81
686055--686134	36	2.2	37	80	10	94	11	67	5	16	1.38
688576--688621	24	2.0	22	83	8	56	50	6	8	34	1.59
689959--690031	36	2.0	36	91	0	119	35	27	10	26	1.90
691796--691823	3	9.3	3	100	0	56	67	0	0	32	0.91
701169--701217	21	2.4	21	80	6	57	46	4	8	40	1.52
715086--715111	11	2.4	11	100	0	52	61	0	0	38	0.96
727133--727384	105	2.4	105	100	0	504	42	12	10	34	1.78
733586--733617	16	2.1	15	94	5	55	50	15	21	12	1.77
733836--733867	16	2.1	15	94	5	55	50	15	21	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733508--734236	250	3.0	250	95	4	1293	32	14	27	26	1.94
737218--737246	11	2.7	11	94	5	51	48	0	0	51	1.00
748980--749223	122	2.0	123	97	0	463	38	13	24	23	1.91

Tables:   1   2

The End!