Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold543
Parameters: 2 7 7 80 10 50 1000
Length:  72019

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4123--4237
42
2.7
43
73
1
115
33
19
19
27
1.96
4239--4339
42
2.4
42
88
3
159
20
19
21
37
1.94
4660--4701
22
1.9
22
85
9
59
23
26
0
50
1.50
12230--12255
7
3.7
7
100
0
52
61
0
0
38
0.96
13792--13828
3
12.3
3
100
0
74
32
0
0
67
0.91
16698--16749
24
2.2
24
82
0
59
51
9
5
32
1.58
20399--20439
7
5.9
7
94
0
73
14
0
41
43
1.45
20967--21404
138
3.2
138
79
3
472
27
20
20
31
1.97
21015--21485
88
5.2
88
73
11
335
28
19
20
31
1.97
21077--21485
44
9.0
44
76
11
317
28
19
20
31
1.97
28329--28361
4
8.2
4
100
0
66
51
0
24
24
1.48
36045--36077
16
2.0
17
88
5
50
21
6
18
54
1.64
39267--39302
17
2.2
16
90
5
54
69
0
0
30
0.89
39641--39676
17
2.2
16
90
5
54
69
0
0
30
0.89
39248--40000
374
2.0
375
99
0
1499
42
11
16
29
1.82
44554--44597
23
1.9
23
81
9
54
29
6
22
40
1.80
45496--45609
39
2.8
40
79
15
135
52
26
1
19
1.55
45505--45605
45
2.3
45
89
5
161
56
22
0
19
1.48
45747--45809
17
3.5
17
69
12
54
34
3
12
49
1.57
45744--45818
37
2.0
37
94
0
114
36
4
14
45
1.64
50005--50056
23
2.3
23
83
6
70
7
13
9
69
1.37
52558--52770
106
2.0
106
92
0
354
36
22
15
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58533--58599
34
1.9
35
87
3
100
31
8
14
44
1.76
59681--59722
14
3.2
14
77
16
54
14
0
9
76
1.02
60207--60564
178
2.0
179
99
0
709
57
11
5
26
1.54
60653--60716
27
2.4
26
86
2
83
40
1
4
53
1.31
60791--60869
34
2.4
34
84
2
106
45
6
20
27
1.75
61817--61929
29
3.9
29
83
4
147
34
20
5
39
1.75
61816--61938
58
2.1
59
87
4
178
35
20
4
39
1.74
61816--61960
29
5.0
29
77
8
114
33
20
6
40
1.78
61816--61960
58
2.5
57
81
7
157
33
20
6
40
1.78
62286--62356
3
23.3
3
78
13
58
67
1
30
0
0.99
62291--62370
13
6.0
13
77
9
63
72
1
26
0
0.92
62471--62530
28
2.1
28
84
9
77
76
10
13
0
1.01
62535--62569
17
2.1
17
89
10
54
28
48
20
2
1.63
62579--62638
26
2.3
26
97
0
111
28
45
26
0
1.54
62628--62672
15
3.1
14
81
18
56
35
35
26
2
1.69
62670--62717
15
3.2
14
80
13
60
83
0
16
0
0.65
62671--62723
22
2.5
21
82
14
65
81
0
18
0
0.70
62683--62724
8
5.7
7
81
18
50
83
0
16
0
0.65

Tables:   1

The End!