genome.fa.s2882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold352
Parameters: 2 7 7 80 10 50 1000
Length:  458127

Tables:   1   2   

This is table  1  of  2  ( 139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6757--6793	19	1.9	19	88	0	56	48	5	0	45	1.25
7605--7648	20	2.1	21	84	12	56	52	18	2	27	1.57
8286--8366	38	2.1	38	90	0	126	19	14	8	56	1.64
17622--17665	4	11.0	4	85	0	52	22	6	2	68	1.25
20736--20779	3	14.7	3	100	0	88	34	0	0	65	0.93
23457--23500	22	2.0	22	86	4	61	59	2	2	36	1.23
32295--32351	18	3.2	18	79	0	69	19	50	3	26	1.63
32301--32358	24	2.4	24	82	0	62	18	51	3	25	1.62
37692--37716	7	3.6	7	100	0	50	12	0	0	88	0.53
43804--43938	40	3.4	39	74	7	130	33	26	14	25	1.95
58299--58323	8	3.1	8	100	0	50	52	12	0	36	1.39
71599--71654	21	2.5	22	72	16	53	21	16	8	53	1.69
84199--84249	14	3.5	14	73	19	50	7	7	7	76	1.16
84240--84282	11	3.9	11	81	0	59	23	16	9	51	1.73
84240--84281	22	1.9	22	90	0	66	23	16	7	52	1.68
90081--90230	26	6.0	26	67	13	84	35	20	24	20	1.96
95023--95050	14	2.0	14	100	0	56	21	21	7	50	1.72
97622--97716	25	3.9	24	70	12	68	33	20	23	23	1.97
97682--97729	24	2.0	25	91	4	80	37	22	22	16	1.94
98168--98198	16	1.9	16	93	0	53	41	12	0	45	1.42
98727--98754	13	2.2	13	100	0	56	14	14	0	71	1.15
99227--99344	59	2.0	59	89	0	182	41	17	20	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110226--110260	18	1.9	18	94	0	61	48	0	42	8	1.33
110887--110949	18	3.4	18	69	4	63	38	3	6	52	1.43
110875--110949	37	2.0	37	97	0	141	36	5	8	50	1.54
122224--122277	6	9.0	6	100	0	108	33	0	16	50	1.46
130384--130549	58	2.8	59	83	4	176	47	7	6	37	1.59
132473--132511	20	1.9	21	84	5	53	66	2	2	28	1.18
132446--132517	30	2.4	30	77	13	85	66	1	2	29	1.14
132681--132725	12	3.8	12	77	11	56	44	0	26	28	1.55
132679--132726	24	2.0	25	95	4	89	41	0	27	31	1.56
132791--132865	32	2.3	32	93	0	132	29	22	18	29	1.98
135488--135519	16	2.0	16	93	0	55	25	15	0	59	1.36
140481--140527	12	3.8	12	80	5	58	40	4	4	51	1.41
140478--140527	25	2.0	25	96	0	91	38	8	6	48	1.57
143391--144356	46	21.0	46	98	0	1806	17	19	23	39	1.92
144370--144490	47	2.6	48	81	2	138	27	16	26	29	1.97
160890--160984	48	2.0	48	100	0	190	35	25	9	29	1.87
173027--173087	23	2.6	24	79	7	72	60	1	3	34	1.23
173641--173685	23	2.0	23	86	8	65	28	0	4	66	1.11
179950--180030	35	2.3	35	93	0	135	41	33	12	12	1.80
183880--183912	16	2.0	17	88	5	50	45	0	6	48	1.27
189032--189109	20	3.9	20	72	0	66	35	17	33	12	1.88
192729--192782	22	2.5	22	84	3	65	14	22	18	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195032--195103	29	2.5	29	80	8	76	33	5	4	56	1.41
201994--202124	32	4.3	31	72	21	107	22	13	12	51	1.75
202113--202183	31	2.4	31	83	9	85	18	14	15	52	1.75
206336--206377	21	2.0	21	85	0	57	38	0	19	42	1.51
209473--209507	17	1.9	19	88	11	56	28	8	14	48	1.73
210708--210770	30	2.1	30	93	0	108	55	15	3	25	1.55
210885--210914	15	1.9	16	93	6	53	16	13	16	53	1.73
211366--211839	238	2.0	239	83	3	598	37	20	15	27	1.92
212169--212207	13	3.0	13	84	0	51	28	35	23	12	1.91
212480--212510	2	15.5	2	100	0	62	48	0	0	51	1.00
213102--213246	25	5.8	25	76	10	111	33	22	25	19	1.97
213425--213472	24	2.0	25	83	4	62	31	14	31	22	1.94
214330--214364	18	2.0	17	88	5	52	31	2	0	65	1.07
222331--222413	27	3.2	26	75	18	84	33	22	27	15	1.95
249834--249885	23	2.2	25	82	13	81	32	42	9	15	1.79
249841--249886	23	2.0	23	100	0	92	34	43	8	13	1.74
250925--250955	12	2.6	12	94	0	53	41	0	9	48	1.36
250925--250955	14	2.2	14	94	0	53	41	0	9	48	1.36
251056--251716	331	2.0	331	99	0	1313	54	5	10	29	1.57
261463--261505	19	2.3	19	100	0	86	30	0	9	60	1.28
261702--261735	15	2.2	16	89	5	52	64	5	2	26	1.30
261841--261880	20	2.0	20	90	0	62	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266951--267006	24	2.3	23	82	14	69	55	17	3	23	1.58
270114--270153	13	3.1	13	92	0	71	22	10	15	52	1.71
273602--273650	24	2.1	23	85	7	64	55	14	4	26	1.57
296222--296261	20	2.0	20	100	0	80	35	0	10	55	1.34
296228--296273	20	2.2	20	84	3	56	36	0	8	54	1.32
296556--296580	11	2.3	11	100	0	50	52	0	0	48	1.00
296686--296741	27	2.2	26	83	6	69	50	10	3	35	1.55
297593--297617	11	2.3	11	100	0	50	52	0	0	48	1.00
297767--297798	11	2.9	11	95	0	55	21	37	21	18	1.94
298285--298310	3	8.7	3	100	0	52	0	30	0	69	0.89
301599--301654	29	2.0	29	89	3	87	62	0	7	30	1.22
301703--301757	9	6.0	9	79	12	58	63	1	0	34	1.05
301694--301758	19	3.4	20	75	16	57	66	1	0	32	1.01
301694--301750	27	2.1	28	86	3	80	66	1	0	31	1.02
302030--302085	29	2.0	29	89	3	87	62	0	7	30	1.22
302134--302188	9	6.0	9	79	12	58	63	1	0	34	1.05
301343--302204	431	2.0	431	99	0	1715	48	8	10	32	1.68
302125--302189	19	3.4	20	75	16	57	66	1	0	32	1.01
302125--302181	27	2.1	28	86	3	80	66	1	0	31	1.02
306465--306858	31	12.8	30	69	12	167	28	7	20	42	1.80
306468--306820	184	1.9	184	94	1	618	28	7	20	42	1.80
319712--319831	41	2.9	41	82	8	145	36	15	15	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320173--320237	31	2.1	31	91	0	103	15	40	21	23	1.91
320180--320252	31	2.4	31	83	4	85	17	41	20	20	1.91
320222--320283	25	2.5	25	83	0	70	20	37	19	22	1.95
321012--321045	12	2.8	12	100	0	68	50	0	17	32	1.47
321309--321353	21	2.1	21	95	0	81	42	8	11	37	1.72
322611--322748	66	2.1	65	83	5	170	41	18	26	14	1.88
322807--322858	25	2.0	25	88	7	77	38	7	5	48	1.56
322935--322992	27	2.1	27	84	12	75	53	0	3	43	1.17
331704--331762	29	2.0	29	96	0	109	35	25	6	32	1.82
332694--332933	118	2.0	118	98	0	462	31	12	22	32	1.92
335474--335635	54	3.0	54	76	3	139	19	28	28	23	1.98
335592--335623	12	2.6	13	85	14	50	6	25	43	25	1.77
342755--342814	21	2.9	21	94	0	102	30	11	13	45	1.79
354291--354472	45	4.1	45	83	4	226	34	26	16	21	1.95
357006--357034	15	1.9	15	100	0	58	62	0	0	37	0.96
369818--369921	13	8.0	13	81	4	120	34	23	7	34	1.83
369818--369921	39	2.7	39	95	0	181	34	23	7	34	1.83
377536--377568	11	3.0	11	91	8	50	54	0	3	42	1.15
377872--377906	18	1.9	18	94	0	61	8	2	8	80	1.01
377874--377913	18	2.2	18	86	0	53	10	2	10	77	1.08
378229--378267	15	2.5	16	84	15	55	43	2	0	53	1.14
379573--379730	79	2.0	79	96	0	289	31	11	24	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382101--382226	21	6.1	20	80	6	144	53	14	15	17	1.74
382103--382224	42	2.9	42	93	1	201	53	14	13	18	1.73
390296--390359	25	2.6	25	85	5	85	28	21	20	29	1.98
390513--390568	30	1.9	28	82	13	69	42	7	19	30	1.78
394769--394895	49	2.6	49	87	0	182	25	24	19	30	1.98
394862--394930	35	2.0	35	100	0	138	28	28	14	27	1.95
394902--395091	50	3.7	49	79	7	173	25	28	19	26	1.99
398235--398268	16	2.1	16	88	5	50	8	0	14	76	1.01
399575--399634	21	2.9	21	82	5	77	40	28	15	16	1.89
413260--413311	26	2.0	26	100	0	104	42	7	11	38	1.70

Tables:   1   2