Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold385
Parameters: 2 7 7 80 10 50 1000
Length:  592280

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
347383--347498
44
2.6
44
83
2
153
29
24
20
25
1.99
368705--369125
138
3.1
138
88
2
641
40
8
6
43
1.61
369176--369204
13
2.2
13
100
0
58
44
13
0
41
1.44
380524--380568
17
2.6
17
82
10
56
75
4
8
11
1.17
386084--386213
40
3.1
43
62
18
112
32
2
16
49
1.58
386078--386244
81
2.1
81
100
0
334
34
2
14
47
1.58
386239--386279
20
2.1
20
86
4
57
24
2
14
58
1.49
395143--395195
27
1.9
26
88
7
70
45
1
5
47
1.37
396178--396206
3
9.7
3
100
0
58
65
0
0
34
0.93
398915--399008
9
9.6
10
71
10
70
58
1
4
36
1.25
399414--399438
13
1.9
13
100
0
50
64
8
12
16
1.49
403791--403844
25
2.1
26
86
10
76
62
1
3
31
1.23
407329--407394
27
2.4
27
87
5
98
25
19
27
27
1.99
408751--408799
10
4.5
11
85
12
57
38
4
2
55
1.31
413740--413818
38
2.1
38
100
0
158
36
10
5
48
1.59
418013--419364
4
338.0
4
100
0
2704
25
0
25
50
1.50
425502--425564
13
4.8
13
82
0
72
34
20
7
36
1.82
430169--430220
15
3.5
15
71
10
52
55
1
0
42
1.10
431837--431894
9
7.5
8
81
16
52
68
0
1
29
0.99
431820--431888
9
8.1
9
73
20
51
65
1
1
31
1.11
436574--436774
87
2.4
83
82
5
224
33
13
10
41
1.80
440357--440417
27
2.3
27
94
0
113
16
4
22
55
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
454445--454503
24
2.5
24
80
0
64
18
30
1
49
1.58
460421--460462
20
2.2
20
86
4
59
28
0
4
66
1.12
460788--460869
5
16.0
5
74
14
53
57
1
3
37
1.24
460797--460871
28
2.7
28
93
0
123
56
2
4
37
1.32
476708--476732
13
1.9
13
100
0
50
32
20
0
48
1.50
476777--476809
16
2.1
16
94
0
57
33
6
39
21
1.78
477029--477063
18
2.0
17
88
5
52
54
0
0
45
0.99
477329--477363
18
2.0
17
88
5
52
54
0
0
45
0.99
477362--477404
16
2.8
16
92
3
70
41
16
0
41
1.48
480184--480285
10
10.9
9
70
13
64
59
3
3
32
1.34
487960--488071
25
4.5
25
84
10
142
20
22
25
32
1.98
488259--488319
31
2.0
30
82
17
74
45
6
18
29
1.74
494150--494229
9
8.9
9
87
5
117
23
10
25
41
1.85
494153--494229
27
2.9
27
94
3
129
24
10
23
41
1.85
496678--496702
12
2.1
12
100
0
50
24
36
8
32
1.84
498113--498140
2
14.0
2
100
0
56
50
0
0
50
1.00
511450--511487
16
2.4
16
90
0
58
34
34
0
31
1.58
527234--527369
23
5.8
23
65
17
66
26
12
18
42
1.86
527199--527570
94
3.9
94
90
2
564
27
13
18
40
1.89
527413--527479
23
2.9
23
73
6
64
26
13
19
40
1.89
536022--536106
36
2.3
36
82
6
100
65
3
9
21
1.36
537230--537269
21
2.0
20
85
14
55
35
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
540551--540590
19
2.1
19
85
0
53
55
5
2
37
1.35
541036--541096
25
2.4
26
78
15
65
40
3
4
50
1.40
543272--543840
285
2.0
285
94
0
996
32
14
16
36
1.90
543815--543856
21
2.0
21
90
9
68
33
9
19
38
1.84
543933--543975
20
2.2
20
91
0
68
30
9
20
39
1.84
552753--552943
94
2.0
94
100
0
382
38
18
18
25
1.93
553075--553445
46
8.5
46
74
11
218
30
19
22
26
1.98
553251--553534
80
3.4
79
70
17
234
29
17
23
29
1.97
553075--553617
44
12.6
44
71
14
262
30
19
22
27
1.98
553161--553682
170
3.1
170
89
3
723
29
19
22
28
1.98
553374--553611
124
1.9
121
81
10
284
29
20
21
28
1.98
555100--555164
30
2.2
28
81
7
76
20
20
4
55
1.61
570938--571019
38
2.1
40
84
4
105
35
29
20
14
1.93
576882--576925
23
1.9
23
95
0
79
43
25
4
27
1.74
580349--580409
25
2.4
25
86
0
77
32
24
19
22
1.97
583646--583697
25
2.1
24
82
10
61
40
21
21
17
1.91

Tables:   1   2

The End!