genome.fa.s2980.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold369
Parameters: 2 7 7 80 10 50 1000
Length:  402231

Tables:   1   2   

This is table  2  of  2  ( 206 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216112--216158	15	3.1	15	76	11	51	27	6	2	63	1.30
220389--220442	6	9.0	6	80	8	65	77	5	1	14	1.03
221950--221999	26	1.9	26	83	0	64	62	2	14	22	1.42
222073--222117	18	2.3	20	88	7	67	80	2	8	8	1.00
229949--230005	30	1.9	30	88	0	87	14	29	36	19	1.91
230815--230855	16	2.5	17	96	4	75	85	0	0	14	0.60
230789--230851	23	2.7	24	78	7	67	79	1	6	12	0.99
230822--230853	9	3.6	9	91	0	55	87	0	0	12	0.54
239989--240014	11	2.4	11	100	0	52	92	0	0	7	0.39
240184--240217	15	2.3	15	89	0	50	70	11	11	5	1.32
241302--241392	47	1.9	47	95	0	164	42	14	6	36	1.71
242397--242422	13	2.0	13	100	0	52	46	0	38	15	1.46
247357--247414	24	2.4	24	91	2	89	18	27	3	50	1.63
247493--247819	36	8.8	36	67	8	172	32	24	20	22	1.98
247569--247779	40	5.5	39	66	13	134	34	23	19	22	1.96
247530--247816	76	3.8	76	85	2	364	32	23	19	23	1.98
254744--254842	41	2.4	41	91	1	155	39	11	25	24	1.88
255977--256002	4	6.5	4	100	0	52	73	0	0	26	0.84
262212--262356	41	3.5	41	93	0	245	28	19	28	24	1.98
262759--263091	164	2.0	165	95	0	596	31	15	15	38	1.88
267189--267263	37	2.0	38	97	2	143	16	32	6	45	1.73
268730--268754	11	2.3	11	100	0	50	64	20	0	16	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283476--283515	21	2.0	20	90	5	62	27	0	12	60	1.33
287878--287913	4	8.8	4	87	6	54	75	2	22	0	0.94
287878--287914	13	2.9	13	92	4	58	75	2	21	0	0.92
289310--289482	11	15.9	11	72	18	123	38	2	0	58	1.13
289302--289366	31	2.1	30	97	2	121	36	1	0	61	1.05
289301--289458	79	2.0	78	92	3	264	37	2	0	60	1.11
291225--291257	10	3.7	9	88	12	50	60	0	12	27	1.32
291959--291991	10	3.7	9	88	12	50	60	0	12	27	1.32
292267--292394	64	2.0	64	92	0	211	44	17	5	32	1.72
292902--292952	20	2.5	20	80	0	66	33	19	35	11	1.88
292941--293305	179	2.0	181	95	1	671	46	16	8	29	1.77
293927--294142	108	2.0	108	98	1	416	34	8	8	49	1.63
294885--294947	29	2.2	29	94	0	108	49	11	0	39	1.38
296253--296347	44	2.2	44	96	0	172	24	22	12	41	1.88
296422--296471	3	16.7	3	100	0	100	66	0	0	34	0.92
301158--301205	19	2.6	17	81	15	60	39	0	0	60	0.97
301158--301205	5	10.4	5	78	17	59	39	0	0	60	0.97
301160--301204	22	2.0	24	91	8	76	42	0	0	57	0.98
302551--302646	39	2.5	39	80	6	108	20	23	28	27	1.99
304586--304961	187	2.0	188	99	0	745	36	18	13	31	1.89
312681--312727	22	2.1	22	96	0	85	17	14	6	61	1.53
312686--312735	22	2.3	22	89	0	73	22	14	4	60	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313120--313295	45	3.9	45	92	0	289	40	21	18	19	1.91
313123--313322	45	4.7	39	85	7	141	40	22	19	19	1.92
315098--315137	16	2.5	16	100	0	80	30	17	7	45	1.76
315329--315390	32	1.9	32	83	0	79	62	3	1	32	1.20
319497--319525	14	2.1	14	100	0	58	27	13	44	13	1.82
324265--324321	23	2.5	24	81	16	68	10	14	0	75	1.05
324781--324818	6	6.2	6	93	6	67	0	15	0	84	0.63
324823--324865	16	2.7	15	85	10	50	2	11	2	83	0.83
324790--324865	35	2.1	36	83	7	93	1	17	1	80	0.85
324781--324867	19	4.8	18	75	14	72	1	17	1	80	0.84
332963--333004	3	14.0	3	94	0	75	33	2	0	64	1.07
334906--334962	30	1.9	30	85	7	80	36	5	7	50	1.52
338534--338580	22	2.3	20	83	16	62	53	10	12	23	1.70
339635--340222	110	5.6	107	80	14	665	31	14	12	40	1.85
339734--340113	101	3.6	102	77	21	387	31	15	12	40	1.84
340063--340270	98	2.1	98	83	7	253	33	15	14	35	1.89
343250--343286	14	2.6	14	86	0	56	67	10	2	18	1.32
347421--347537	24	5.2	24	65	22	92	36	16	23	23	1.94
347441--347554	20	5.3	20	66	22	70	37	15	23	22	1.93
347424--347555	44	3.0	44	100	0	264	38	15	22	22	1.92
349000--349030	12	2.6	12	100	0	62	0	6	61	32	1.21
349000--349057	24	2.4	24	82	0	62	1	6	60	31	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348900--349072	75	2.3	75	82	0	193	14	6	51	27	1.67
349039--349207	60	2.8	60	88	0	257	14	11	49	25	1.76
356274--356313	13	3.1	13	92	0	71	27	7	25	40	1.82
360579--360616	19	2.0	19	94	0	67	7	15	7	68	1.37
366587--366620	18	1.9	18	94	5	61	44	0	2	52	1.16
373300--373378	39	2.0	39	97	0	149	44	26	3	25	1.71
375988--376076	3	29.7	3	100	0	178	0	32	0	67	0.91
377119--377161	21	2.0	21	100	0	86	51	9	9	30	1.65
381345--381386	16	2.4	18	76	15	52	35	7	0	57	1.26
381925--381988	33	1.9	33	90	0	101	17	42	15	25	1.88
381925--382004	33	2.4	33	85	0	88	17	42	16	23	1.88
384785--384845	30	2.0	31	87	12	90	49	11	9	29	1.71
388327--388366	21	2.0	21	85	5	55	45	15	0	40	1.46
394059--394268	106	2.0	106	91	0	339	32	19	18	29	1.95
394601--394642	20	2.0	21	81	4	50	73	2	2	21	1.06
396315--396403	45	2.0	45	84	4	117	28	19	15	37	1.92
396422--396453	7	4.6	7	96	0	55	28	37	3	31	1.73
396450--396754	45	6.8	45	79	5	348	31	23	16	28	1.96
396450--396754	90	3.4	90	88	2	400	31	23	16	28	1.96
396451--396793	135	2.5	135	79	6	324	30	23	16	30	1.96

Tables:   1   2

The End!