Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold317
Parameters: 2 7 7 80 10 50 1000
Length:  948703

Tables:   1   2   3   

This is table  3  of  3  ( 268 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
872897--872930
12
2.8
13
86
13
54
14
23
0
61
1.33
890795--890828
15
2.3
15
89
0
50
41
11
2
44
1.56
899393--899436
19
2.4
19
80
3
54
27
0
2
70
0.99
905269--905388
63
1.9
63
91
0
195
25
28
21
24
1.99
914120--914183
17
3.6
17
72
15
58
26
12
12
48
1.76
914388--914481
48
2.0
48
91
0
152
20
17
21
41
1.90
915600--915665
31
2.1
31
100
0
132
37
28
21
12
1.89
919222--919285
17
3.6
17
72
15
58
26
12
12
48
1.76
919214--919284
36
2.0
36
94
0
124
25
12
14
47
1.79
919213--919269
19
3.1
19
71
19
66
26
12
15
45
1.82
919489--919583
48
2.0
48
95
0
172
17
17
23
41
1.90
919821--919873
16
3.4
16
73
23
51
58
3
1
35
1.27
919821--919883
15
4.1
16
72
15
60
57
3
1
38
1.24
923933--923989
28
2.1
27
87
9
80
24
3
1
70
1.13
925908--925951
23
2.0
22
82
13
54
56
4
0
38
1.20
930975--931027
26
2.0
26
100
0
106
30
15
22
32
1.94
932235--932278
3
14.7
3
100
0
88
34
0
0
65
0.93
932437--932500
30
2.1
32
85
5
87
46
1
4
46
1.33
932836--932885
3
16.7
3
100
0
100
32
0
0
68
0.90
937333--937429
45
2.2
45
83
3
115
23
41
16
18
1.90
940872--940897
3
8.7
3
100
0
52
69
0
0
30
0.89
941424--941477
21
2.6
21
87
0
81
27
7
35
29
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
941784--941826
15
2.7
16
82
7
52
62
0
2
34
1.08
943129--943153
2
12.5
2
100
0
50
48
0
0
52
1.00
943914--943960
21
2.2
21
85
7
60
36
17
23
23
1.95
945107--945278
73
2.4
72
84
2
211
26
22
26
24
2.00
945178--945716
114
4.7
114
87
2
776
25
22
26
26
2.00
945178--945716
229
2.4
227
87
4
760
25
22
26
26
2.00

Tables:   1   2   3

The End!