genome.fa.s3023.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold245
Parameters: 2 7 7 80 10 50 1000
Length:  689785

Tables:   1   2   

This is table  2  of  2  ( 234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396651--396710	30	2.0	30	87	3	86	46	0	30	23	1.52
396753--396784	9	3.6	9	95	0	55	28	12	12	46	1.78
398509--398548	16	2.4	16	84	15	55	80	2	17	0	0.83
398509--398553	16	2.7	16	82	6	54	80	2	15	2	0.92
399345--399379	17	2.1	17	100	0	70	28	22	0	48	1.51
412230--412254	2	12.5	2	100	0	50	48	0	0	52	1.00
414425--414595	82	2.1	83	97	1	326	41	1	9	47	1.43
421721--421838	23	5.3	23	86	8	181	30	27	20	22	1.98
421721--421837	42	2.6	43	85	10	146	30	27	20	21	1.98
422271--422339	30	2.3	30	85	5	86	28	20	7	43	1.78
422303--422351	16	3.2	16	71	11	57	24	22	6	46	1.74
422291--422359	30	2.3	30	90	5	113	21	27	5	44	1.75
422772--422823	21	2.5	21	96	0	95	55	11	23	9	1.64
445613--445645	16	2.1	16	94	0	57	66	0	6	27	1.15
448315--448354	20	2.0	21	85	5	55	37	15	7	40	1.75
451013--451043	9	3.4	9	90	0	53	25	12	22	38	1.90
451097--451133	9	4.1	9	92	0	65	45	13	10	29	1.77
452086--452111	5	5.2	5	100	0	52	19	19	19	42	1.90
452572--452709	43	3.2	43	87	4	206	21	29	21	28	1.98
452690--452825	44	3.1	44	97	0	254	16	25	22	35	1.95
453146--453195	21	2.4	21	100	0	100	0	50	18	32	1.47
453562--453592	8	3.9	8	95	0	53	48	25	22	3	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455626--455719	38	2.5	37	89	6	143	36	42	2	19	1.63
455623--455729	38	2.5	44	76	20	136	34	43	1	19	1.62
456283--456374	39	2.4	38	85	1	121	32	42	2	22	1.66
456283--456374	21	4.8	20	76	17	79	32	42	2	22	1.66
456881--456958	41	1.9	41	89	5	122	29	29	21	19	1.98
457005--457117	40	2.8	39	80	6	129	26	20	17	35	1.95
457195--457240	23	2.0	23	91	0	74	43	6	10	39	1.66
460061--460126	34	1.9	34	84	3	87	45	27	7	19	1.77
478400--478494	46	2.0	47	97	2	183	22	8	14	54	1.66
480081--480137	3	19.0	3	100	0	114	33	0	0	66	0.92
483585--483643	29	2.0	30	90	3	93	40	10	3	45	1.54
485029--485080	26	2.0	26	88	7	79	51	0	5	42	1.25
489820--489895	30	2.5	31	80	2	91	27	13	11	47	1.77
492381--492444	27	2.3	27	89	2	92	56	1	4	37	1.30
500485--500511	2	13.5	2	100	0	54	0	48	0	51	1.00
505528--505557	14	2.1	14	93	0	51	60	0	0	40	0.97
511930--511963	12	2.9	12	95	4	61	35	0	0	64	0.94
511956--511989	18	1.9	18	88	5	52	61	2	0	35	1.11
516076--516114	19	2.1	19	100	0	78	56	0	5	38	1.22
519808--519869	28	2.2	28	94	0	97	14	27	4	53	1.61
535382--535576	106	1.8	107	84	3	268	14	17	41	25	1.88
538586--538610	13	1.9	13	100	0	50	16	0	24	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538925--538969	23	2.0	23	91	8	74	44	17	4	33	1.69
538926--538975	23	2.2	23	85	7	66	46	18	6	30	1.73
550430--550478	27	1.9	24	84	12	62	53	0	0	46	1.00
550456--550492	17	2.1	18	90	5	58	54	0	0	45	1.00
550431--550492	24	2.6	24	77	7	72	54	0	0	45	0.99
551316--551343	3	9.3	3	100	0	56	32	0	0	67	0.91
562798--562829	3	10.7	3	100	0	64	34	0	0	65	0.93
566450--566478	15	1.9	15	100	0	58	41	17	0	41	1.49
568557--568617	22	2.7	22	87	2	77	49	1	1	47	1.21
568593--568632	16	2.5	16	91	0	62	50	2	5	42	1.37
568635--568754	59	2.1	59	90	1	197	41	5	9	44	1.58
568820--568863	24	1.9	24	90	9	74	61	2	0	36	1.09
588898--588974	30	2.5	30	85	10	95	51	7	0	40	1.31
589136--589164	14	2.0	15	93	6	51	62	0	0	37	0.96
589172--589209	15	2.5	15	87	12	51	44	2	2	50	1.30
590172--590248	30	2.5	30	85	10	95	51	7	0	40	1.31
590410--590438	14	2.0	15	93	6	51	62	0	0	37	0.96
590446--590483	15	2.5	15	87	12	51	44	2	2	50	1.30
593118--593155	16	2.5	16	87	8	53	28	0	2	68	1.03
594272--594384	57	2.0	57	89	3	174	43	4	2	49	1.36
601287--601425	74	1.9	74	98	0	269	32	19	19	28	1.96
606192--606286	44	2.1	44	80	5	102	29	23	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606213--607345	44	25.7	44	71	10	496	27	20	20	31	1.97
606789--607035	41	5.9	40	79	6	208	28	19	21	30	1.97
606807--607345	85	6.2	89	75	10	244	29	18	20	31	1.96
607399--607531	51	2.6	51	74	8	126	27	24	18	29	1.98
607477--607622	72	2.0	71	80	1	157	26	26	13	32	1.94
607548--607653	51	2.1	52	81	1	124	30	21	15	33	1.94
607820--608006	88	2.1	88	86	2	250	29	21	19	29	1.97
609166--609243	40	2.0	39	87	2	111	15	25	17	41	1.89
612135--612181	19	2.5	20	86	6	62	44	8	19	27	1.79
613693--613836	73	2.0	74	93	4	247	36	17	17	28	1.92
615079--615117	19	2.1	19	100	0	78	20	20	41	17	1.91
618498--618529	15	2.1	16	88	11	50	68	18	0	12	1.20
618546--618576	16	2.0	16	93	6	55	45	12	6	35	1.68
629097--629312	45	4.8	45	79	9	188	45	18	18	17	1.85
629098--629398	90	3.3	90	81	5	268	46	16	19	18	1.85
629154--629407	46	5.6	45	82	6	262	46	15	18	19	1.85
629862--630889	514	2.0	514	100	0	2056	27	9	24	38	1.87
632638--632680	20	2.1	21	83	12	54	72	4	20	2	1.14
642009--642087	38	2.1	38	80	4	88	36	5	7	50	1.53
644030--644054	12	2.1	12	100	0	50	36	0	0	64	0.94
644514--644578	31	2.1	30	88	2	94	30	4	7	56	1.48
654858--654889	3	10.7	3	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656702--656852	25	6.1	25	74	14	125	32	23	27	16	1.96
656702--656830	25	5.2	24	79	7	127	31	23	28	16	1.96
656702--656819	49	2.4	48	85	4	146	32	22	27	16	1.96
656891--656950	24	2.4	25	86	8	79	33	23	30	13	1.93
660898--660947	24	2.0	25	84	3	66	20	54	20	6	1.65
661560--661606	23	2.0	23	87	0	67	27	10	14	46	1.78
663144--663194	20	2.6	19	81	3	57	23	5	29	41	1.78
663643--663670	9	3.1	9	100	0	56	53	0	0	46	1.00
663748--663822	27	2.8	27	80	8	98	17	24	33	25	1.96
667646--667681	12	3.0	12	87	0	54	11	36	27	25	1.90
668308--668341	14	2.4	14	90	0	50	41	8	17	32	1.80
669282--669331	18	2.7	18	77	22	59	76	6	0	18	0.99
669296--669337	16	2.7	15	76	20	50	76	2	0	21	0.90
671316--671380	29	2.2	29	83	5	76	40	1	0	58	1.07
671350--671376	12	2.2	12	100	0	54	33	0	0	66	0.92
671321--671375	22	2.6	21	75	13	58	38	1	0	60	1.08
680686--680784	28	3.6	27	90	2	144	39	11	2	47	1.51
680848--680925	27	2.9	27	83	5	97	28	23	29	19	1.98
680998--681036	19	2.1	19	85	4	53	35	7	0	56	1.28
681003--681045	18	2.3	19	84	4	52	39	11	0	48	1.40
681042--681107	19	3.6	19	81	6	82	53	0	10	36	1.36
681042--681107	18	3.6	19	81	6	91	53	0	10	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684814--684872	31	1.9	30	82	3	73	35	11	16	35	1.86
687762--687796	16	2.2	16	89	0	52	37	2	31	28	1.72
688056--688098	22	1.9	22	85	4	59	41	0	4	53	1.21
688596--688838	128	1.9	130	90	2	391	21	16	14	46	1.83

Tables:   1   2

The End!