genome.fa.s3129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold310
Parameters: 2 7 7 80 10 50 1000
Length:  899071

Tables:   1   2   

This is table  1  of  2  ( 236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708--740	11	2.8	12	86	9	50	66	6	0	27	1.15
1639--1675	18	2.1	18	89	0	56	72	0	18	8	1.08
9146--9187	19	2.3	18	80	8	50	69	2	21	7	1.25
20776--20833	14	4.1	14	84	8	82	63	3	10	22	1.40
35513--35646	66	2.0	66	97	0	250	29	20	12	36	1.90
39772--39803	15	2.1	16	94	5	57	71	0	21	6	1.07
44972--45021	20	2.6	19	78	6	55	36	2	10	52	1.47
45599--45642	22	2.0	22	95	0	79	25	36	4	34	1.76
46131--46199	27	2.6	27	81	9	86	14	18	21	44	1.85
49514--49556	20	2.2	20	86	0	59	32	11	25	30	1.91
56465--56518	20	2.7	20	82	0	63	24	20	18	37	1.94
56465--56538	30	2.5	30	86	8	98	21	20	18	39	1.93
56465--56529	20	3.2	20	71	16	53	23	21	16	38	1.93
63471--63515	18	2.6	16	89	10	63	75	2	17	4	1.07
63481--63515	6	5.8	6	86	0	52	77	2	17	2	1.02
65821--65855	13	2.7	13	95	0	61	71	0	22	5	1.07
66108--66153	24	2.0	22	84	12	58	23	39	4	32	1.75
69109--69162	27	2.0	27	85	7	74	29	11	12	46	1.77
75905--75958	20	2.7	19	86	8	81	37	16	22	24	1.94
80683--80833	76	2.0	76	88	0	221	40	5	24	29	1.79
103797--103855	20	3.0	20	72	5	57	18	22	16	42	1.89
107417--107467	23	2.2	23	92	0	84	25	7	23	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108469--108498	11	2.7	11	94	0	51	46	0	26	26	1.53
108474--111399	326	9.0	321	85	5	3633	35	9	17	37	1.82
108474--111399	967	3.0	964	85	5	3865	35	9	17	37	1.82
111078--111106	14	2.1	14	100	0	58	31	0	6	62	1.22
115530--115652	41	3.0	41	84	2	167	21	17	26	34	1.95
121198--121224	12	2.2	12	100	0	54	33	0	59	7	1.25
122488--122561	27	2.7	27	87	0	112	29	21	18	29	1.97
125204--125263	20	3.0	20	90	0	93	15	28	20	36	1.92
125216--125275	20	3.0	21	81	13	74	18	26	16	38	1.92
127253--127449	105	1.9	101	82	8	245	30	16	25	26	1.96
135976--136259	43	6.7	42	78	8	270	34	25	16	23	1.95
135937--136259	85	3.8	85	88	0	450	34	25	16	23	1.96
136236--136285	26	1.9	26	95	0	91	28	32	22	18	1.97
150046--150089	23	1.9	23	85	0	61	38	2	6	52	1.41
150631--150663	12	2.5	13	90	9	50	12	18	0	69	1.18
154200--155420	608	2.0	609	97	0	2327	35	16	18	29	1.93
155788--155863	25	3.0	25	86	0	107	43	18	5	32	1.72
189589--189630	20	2.2	20	87	12	61	57	4	21	16	1.58
193959--194020	3	20.7	3	96	0	115	0	32	0	67	0.91
194911--194964	25	2.1	26	86	10	76	62	1	3	31	1.23
195073--195114	21	2.0	20	86	13	59	19	9	50	21	1.75
203945--203982	18	2.1	19	90	5	60	63	5	7	23	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224124--224168	20	2.3	19	84	7	54	31	11	33	24	1.90
227597--227647	20	2.6	20	90	3	77	25	27	19	27	1.99
229431--229472	12	3.6	12	93	3	68	76	4	4	14	1.12
230510--230848	165	2.1	165	93	0	588	20	22	32	24	1.98
236893--237243	46	7.3	45	83	9	353	26	25	19	29	1.98
236893--237273	97	3.9	97	82	10	508	27	24	19	28	1.99
237581--237641	24	2.5	24	86	0	86	29	26	9	34	1.88
238602--238633	9	3.6	9	100	0	64	9	9	0	81	0.88
247423--247461	15	2.7	15	96	4	71	17	12	2	66	1.35
253907--253965	30	2.0	29	83	3	73	61	5	3	30	1.34
254024--254161	24	6.1	24	74	18	77	51	2	8	36	1.48
260601--260854	50	5.1	50	90	0	364	20	31	21	25	1.98
265214--265464	40	6.3	40	81	3	229	19	26	15	38	1.92
265254--265459	80	2.6	80	84	1	252	19	27	14	37	1.91
265341--265449	20	5.4	20	65	8	60	20	28	18	33	1.96
272541--272584	21	2.0	22	83	12	56	52	22	0	25	1.48
276471--276510	20	2.0	20	95	4	73	25	22	10	42	1.84
279502--279564	26	2.4	26	86	0	90	38	12	11	38	1.79
284622--285585	481	2.0	481	100	0	1928	32	20	19	28	1.97
288445--289178	370	2.0	368	89	1	1119	31	15	21	32	1.94
294903--294937	16	2.1	17	94	5	63	11	48	0	40	1.39
299903--299927	9	2.8	9	100	0	50	20	24	44	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302241--302283	13	3.3	13	96	0	77	0	18	46	34	1.50
307434--307473	14	2.7	15	88	7	55	75	0	22	2	0.93
312052--312110	30	2.0	30	86	3	84	54	13	1	30	1.49
314739--314788	26	2.0	25	92	4	82	36	24	22	18	1.95
314600--314811	48	4.3	50	70	9	148	34	20	25	18	1.96
314537--314811	25	11.1	25	71	16	153	34	21	25	18	1.96
325760--325790	16	1.9	16	93	0	53	38	0	3	58	1.15
325798--326029	115	2.0	116	99	0	457	43	9	8	37	1.68
334732--334769	13	3.0	13	82	17	53	39	0	15	44	1.47
335023--335047	10	2.5	10	100	0	50	20	8	28	44	1.79
338530--338633	49	2.1	49	87	1	147	28	8	10	51	1.66
340746--340798	16	3.3	16	91	0	88	22	32	3	41	1.72
343226--343273	14	3.4	14	75	11	53	22	22	0	54	1.45
343661--343725	19	3.4	19	89	4	96	33	20	24	21	1.97
343661--343745	38	2.2	37	81	4	89	36	21	23	18	1.95
344264--344566	150	2.0	152	92	1	511	30	18	8	41	1.81
347612--347676	32	2.0	33	96	3	123	33	12	12	41	1.80
348907--349102	73	2.6	75	82	9	238	37	4	17	40	1.69
349098--349546	224	2.0	225	98	1	875	34	4	19	41	1.70
356042--356169	45	2.8	45	85	5	170	42	14	20	21	1.88
360575--360607	17	2.0	17	88	5	50	42	0	6	51	1.26
363803--363872	25	2.8	25	82	0	86	34	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368816--369013	27	7.3	27	81	7	206	42	20	18	18	1.89
368816--369013	55	3.7	53	81	4	220	42	20	18	18	1.89
368816--369013	82	2.5	81	81	7	233	42	20	18	18	1.89
368839--369037	27	7.4	27	78	3	86	40	20	19	19	1.91
369292--369380	32	2.8	32	79	3	90	20	20	22	37	1.95
369611--369667	28	2.0	28	89	0	87	22	22	21	33	1.97
373979--374023	17	2.7	18	80	16	53	0	42	2	55	1.12
379329--379373	24	1.9	23	90	4	72	55	17	17	8	1.67
379712--379799	27	3.3	27	79	6	97	47	18	14	19	1.82
400853--400892	20	2.0	20	85	9	55	35	10	12	42	1.76
403990--404021	17	1.9	16	93	6	55	25	18	28	28	1.98
407170--407242	37	2.0	37	100	0	146	41	8	12	38	1.73
409845--409882	17	2.2	18	85	4	51	63	5	0	31	1.17
410582--410615	16	2.2	15	89	5	50	55	2	0	41	1.15
422345--422458	54	2.1	55	96	1	212	50	13	12	24	1.75
439687--439721	14	2.5	15	86	13	56	28	0	11	60	1.32
451932--452019	20	4.3	20	73	8	79	36	20	30	12	1.90
459511--459557	22	2.1	22	84	0	58	46	17	17	19	1.84
459549--459811	32	8.3	32	80	7	169	38	19	19	22	1.94
459563--459784	95	2.3	96	82	3	259	38	19	19	22	1.94
459858--459921	27	2.4	27	85	12	80	31	23	25	20	1.98
459986--460067	24	3.5	24	78	8	87	48	25	6	19	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459999--460068	23	3.0	23	80	2	77	50	25	5	18	1.69
460107--460489	27	14.2	27	85	3	443	23	18	20	37	1.94
460107--460489	81	4.7	81	84	5	488	23	18	20	37	1.94
467188--467257	34	2.1	34	100	0	140	30	8	17	44	1.78
467446--467491	21	2.2	21	84	0	56	28	13	26	32	1.93
469013--469088	35	2.2	35	87	0	107	30	25	22	22	1.99
470527--470569	21	2.1	21	83	8	54	30	6	23	39	1.81
477278--477317	20	2.0	20	85	9	55	37	12	5	45	1.64
478350--478401	15	3.5	15	76	10	52	26	26	23	23	2.00
478422--478452	14	2.2	14	94	0	53	29	19	16	35	1.93

Tables:   1   2