genome.fa.s3548.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold242
Parameters: 2 7 7 80 10 50 1000
Length:  704627

Tables:   1   2   

This is table  2  of  2  ( 227 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407610--407646	19	2.0	19	94	5	67	21	13	21	43	1.87
411279--411326	17	2.9	17	87	3	71	50	20	2	27	1.60
413340--413434	30	3.1	30	71	8	84	49	11	6	32	1.64
428821--428866	3	15.3	3	82	8	58	30	0	2	67	1.03
428821--428899	36	2.2	37	81	6	90	35	1	2	60	1.18
429137--429194	24	2.4	25	88	2	82	20	5	6	67	1.34
429152--429204	4	13.0	4	78	4	52	22	3	5	67	1.28
429996--430045	26	1.9	26	100	0	100	24	4	24	48	1.68
432966--433083	43	2.8	41	77	12	121	27	16	17	38	1.91
432966--433098	43	3.1	42	77	12	119	27	15	18	39	1.90
439442--439474	16	2.1	16	94	0	57	30	9	21	39	1.84
444085--444152	33	2.1	33	83	8	86	26	5	4	63	1.36
444115--444166	25	2.1	25	82	7	61	34	7	3	53	1.48
444235--444285	14	3.6	14	76	12	50	35	0	1	62	1.06
444213--444286	29	2.6	28	75	14	71	37	0	2	59	1.12
444213--444288	28	2.7	27	74	9	80	39	0	2	57	1.12
444876--444925	21	2.4	22	80	12	61	52	10	2	36	1.47
445450--445531	28	3.0	27	75	10	76	36	4	3	54	1.39
445482--445577	26	3.5	28	69	18	69	33	1	5	60	1.26
445544--445607	31	2.1	31	85	5	85	35	1	3	59	1.23
445511--445670	9	17.7	9	67	20	50	31	1	3	63	1.21
447680--447723	23	1.9	23	81	9	54	50	0	4	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459488--459534	15	3.1	15	82	11	60	65	0	0	34	0.93
459854--459906	19	2.8	18	74	8	52	20	0	18	60	1.36
460453--460489	19	1.9	19	94	0	65	18	10	0	70	1.16
463562--463754	93	2.1	94	82	7	234	35	17	13	34	1.88
465824--465942	4	29.8	4	100	0	238	24	0	25	50	1.50
466418--466449	8	3.8	9	88	12	50	90	9	0	0	0.45
466418--466449	17	1.9	16	93	6	55	90	9	0	0	0.45
467544--467589	18	2.6	18	85	0	65	41	19	8	30	1.82
467702--467726	13	1.9	13	100	0	50	12	0	48	40	1.40
468925--468951	8	3.4	8	100	0	54	11	11	62	14	1.53
473408--473454	23	2.0	24	83	4	60	34	31	19	14	1.92
473811--473842	8	3.9	8	95	4	55	50	0	0	50	1.00
473812--473851	17	2.4	17	87	4	55	52	0	2	45	1.14
475417--475470	21	2.7	21	75	16	60	44	12	9	33	1.75
493832--493889	29	2.0	29	83	6	73	37	15	18	27	1.92
502812--502872	13	4.7	13	87	0	77	36	27	9	26	1.88
506552--506929	186	2.0	186	99	0	747	34	21	8	35	1.84
507434--507571	45	3.1	44	74	13	122	36	21	13	28	1.91
508135--508368	50	4.7	50	93	0	405	18	33	21	26	1.96
511615--512863	624	2.0	624	99	0	2446	26	16	18	38	1.92
524960--525007	23	2.2	23	88	7	73	75	4	8	12	1.18
525475--525506	16	1.9	17	93	6	57	46	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525475--525543	27	2.6	27	88	4	95	46	0	1	52	1.09
525510--525882	186	2.0	187	99	0	739	38	8	10	42	1.70
527471--527679	82	2.5	82	100	0	418	31	19	14	34	1.92
536122--536165	22	2.0	22	90	0	70	13	22	18	45	1.84
538284--538334	22	2.4	21	87	6	68	68	1	1	27	1.11
540666--540705	17	2.4	17	82	0	53	52	0	5	42	1.23
552698--552748	18	2.7	18	84	6	57	41	15	17	25	1.89
552964--553008	7	6.3	7	79	5	54	15	15	13	55	1.69
553258--553318	17	3.4	17	68	12	50	32	3	13	50	1.57
553252--553360	37	2.9	37	90	0	173	34	4	13	46	1.64
553359--553429	9	8.0	9	85	3	99	30	11	25	32	1.91
553369--553430	26	2.3	26	91	2	97	30	9	24	35	1.87
553589--553613	12	2.1	12	100	0	50	16	24	36	24	1.94
562158--562312	46	3.6	46	77	16	195	36	13	21	27	1.91
562194--562312	36	3.0	36	74	21	130	36	14	21	27	1.92
562158--562312	82	1.9	82	97	0	292	36	13	21	27	1.91
568600--568646	20	2.3	21	82	10	62	31	0	4	63	1.13
569481--569552	35	2.1	35	100	0	144	29	11	12	47	1.76
570268--570305	19	2.1	18	90	5	58	76	2	5	15	1.08
570272--570305	6	5.5	6	86	6	50	76	2	2	17	1.04
570272--570305	13	2.8	12	86	8	50	76	2	2	17	1.04
570757--570804	22	2.2	22	100	0	96	43	16	8	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573453--573481	15	1.9	15	100	0	58	48	17	13	20	1.81
574636--574660	13	1.9	13	100	0	50	88	0	12	0	0.53
597342--597385	3	14.3	3	85	4	52	25	65	0	9	1.21
604457--604488	16	2.0	16	100	0	64	56	25	18	0	1.42
608291--608417	63	2.0	63	96	0	236	34	11	13	40	1.81
612100--612208	54	2.0	54	90	0	173	24	22	19	33	1.97
619643--619698	13	4.8	11	74	18	51	17	5	0	76	0.96
622768--622853	30	3.2	25	75	16	91	27	6	15	50	1.69
622772--623334	31	18.8	29	73	15	169	30	7	18	43	1.78
622827--623333	61	8.4	60	77	12	407	30	8	18	43	1.79
622848--623331	92	5.3	92	86	4	590	30	8	18	42	1.79
623196--623248	25	2.1	25	86	6	72	28	13	13	45	1.80
623442--623603	43	3.7	43	89	1	234	31	17	30	20	1.96
633363--633390	3	9.3	3	100	0	56	32	0	32	35	1.58
639258--639296	12	3.4	12	82	13	55	41	0	0	58	0.98
640426--640549	44	3.1	44	63	26	119	43	9	6	40	1.63
640396--640549	76	2.0	76	98	0	299	44	7	5	42	1.55
644227--644268	18	2.3	18	88	8	59	59	2	0	38	1.10
644742--644778	19	1.9	19	88	0	56	48	0	2	48	1.15
644787--644836	16	3.2	16	70	18	52	52	0	0	48	1.00
644768--644833	29	2.2	30	86	10	91	57	0	0	42	0.98
649550--649580	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658556--658596	17	2.4	17	87	4	55	65	2	2	29	1.18
658565--658607	17	2.6	16	82	10	50	60	2	4	32	1.30
658709--658751	22	2.0	22	85	0	59	62	4	0	32	1.15
661577--661606	4	7.2	4	96	3	51	46	23	0	30	1.52
661923--661950	4	7.0	4	100	0	56	25	25	50	0	1.50
667684--667709	5	5.2	5	100	0	52	38	19	19	23	1.93
667658--667709	26	2.0	26	81	7	61	34	15	26	23	1.94
668362--668398	9	4.1	9	89	0	56	29	8	13	48	1.71
668451--668481	9	3.4	9	90	0	53	38	22	12	25	1.90
680018--680044	14	1.9	14	100	0	54	85	0	14	0	0.61
685248--685285	20	1.9	20	88	0	58	52	13	5	28	1.61
685234--685300	34	1.9	35	87	3	100	47	11	7	32	1.68
696130--696165	3	12.0	3	100	0	72	33	0	0	66	0.92
696232--696264	3	11.0	3	100	0	66	33	0	0	66	0.92
696122--696321	99	2.0	100	99	0	393	31	7	5	56	1.48
703594--703707	40	2.8	39	72	13	97	36	4	13	45	1.63
703710--704625	150	6.0	151	84	7	1133	32	10	6	51	1.62
703699--704627	304	3.1	304	88	5	1348	31	10	6	51	1.62
703710--704625	458	2.0	450	85	5	1211	32	10	6	51	1.62

Tables:   1   2

The End!