Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold476
Parameters: 2 7 7 80 10 50 1000
Length:  220969

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163612--166734
582
5.4
581
89
3
4003
29
23
18
28
1.98
167481--168634
46
24.2
46
70
12
497
29
22
17
29
1.97
167502--168663
97
12.1
97
82
2
1256
29
22
17
29
1.97
168011--168178
84
2.0
84
84
0
219
29
20
20
29
1.98
171544--171748
107
1.9
107
86
4
288
33
17
17
31
1.93
180435--180614
44
4.1
44
74
5
148
25
20
22
31
1.98
180652--181462
97
8.4
94
88
3
946
27
24
18
28
1.98
180649--181462
194
4.2
194
87
3
1065
27
24
19
28
1.98
180652--181462
291
2.8
291
86
3
1075
27
24
18
28
1.98
184496--184863
144
2.6
144
98
0
709
36
16
20
27
1.93
184939--185228
144
2.0
144
91
1
474
34
18
20
27
1.96
186463--186503
18
2.4
17
80
19
50
56
2
2
39
1.26
186549--186582
16
2.1
16
89
10
52
35
2
2
58
1.28
188951--189054
26
4.0
26
72
7
75
59
0
5
33
1.28
188967--189053
18
4.8
18
72
14
81
59
0
6
33
1.24
188981--189054
14
5.5
14
70
15
57
60
0
6
32
1.23
188960--189073
53
2.1
54
95
1
203
64
0
7
28
1.20
190145--190177
17
1.9
17
93
0
57
21
15
51
12
1.75
190776--191538
89
8.6
89
91
1
1215
27
23
17
31
1.97
191727--191771
22
2.0
23
86
4
65
40
4
20
35
1.72
192833--192874
7
6.0
7
79
20
52
14
16
0
69
1.20
193829--193868
19
2.1
19
90
9
64
65
5
15
15
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
198661--199017
176
2.0
176
97
0
669
27
18
17
37
1.93
199939--199996
21
2.8
22
82
15
70
39
1
3
55
1.27
200027--200300
43
6.4
43
80
4
288
17
32
33
16
1.92
200027--200300
85
3.2
85
82
4
329
17
32
33
16
1.92
200029--200299
128
2.1
128
88
1
391
17
32
33
16
1.92
201690--201741
15
3.6
15
78
17
56
13
17
0
69
1.19
201692--201741
7
7.0
7
79
20
59
14
16
0
70
1.18
202653--202686
10
3.3
10
88
8
50
2
8
0
88
0.62
202723--202781
18
3.3
18
77
15
61
13
0
8
77
0.97
202733--202781
14
3.9
13
76
23
52
14
0
8
77
0.98
219612--220037
212
2.0
213
99
0
845
30
14
22
33
1.93
219996--220197
30
6.8
30
83
6
214
40
2
19
37
1.65
220036--220216
90
2.0
90
82
6
224
42
1
19
37
1.59

Tables:   1   2

The End!