genome.fa.s4015.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold430
Parameters: 2 7 7 80 10 50 1000
Length:  405003

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276977--277027	23	2.1	23	82	13	59	43	1	1	52	1.23
278392--278416	7	3.6	7	100	0	50	28	0	12	60	1.32
279508--279593	43	2.0	45	90	4	140	37	0	12	50	1.41
279950--280015	29	2.2	31	81	13	93	45	25	0	28	1.54
280041--280257	116	1.9	116	95	0	391	38	9	8	42	1.69
280234--280290	17	3.3	17	80	7	53	40	12	1	45	1.52
283276--283639	124	2.8	125	87	5	496	32	21	16	29	1.96
285232--285262	3	10.3	3	100	0	62	32	0	0	67	0.91
289704--289979	91	3.0	90	83	3	331	35	23	14	25	1.93
295768--295837	27	2.7	26	78	8	70	62	10	4	22	1.43
296059--296110	21	2.5	21	87	6	70	63	1	5	28	1.28
296024--296114	25	3.8	24	76	13	91	62	2	4	30	1.27
307620--307681	22	2.8	22	87	0	79	67	12	12	6	1.40
307627--307681	11	5.0	11	86	0	83	65	12	14	7	1.46
308079--308136	22	2.4	26	80	13	79	63	0	0	36	0.94
308081--308121	14	2.9	15	83	16	52	70	0	0	29	0.87
309909--309994	23	3.7	23	82	4	102	43	12	9	34	1.75
312929--313051	64	1.9	64	86	0	174	27	22	27	21	1.99
312938--313081	64	2.3	64	82	3	166	26	21	29	22	1.99
313053--313159	54	2.0	54	92	0	178	29	23	33	13	1.92
314070--314098	14	2.1	14	100	0	58	34	13	37	13	1.85
314945--314981	18	2.0	19	89	5	58	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320000--320051	24	2.1	24	82	10	61	69	13	1	15	1.28
322020--322060	21	1.9	22	85	5	57	68	2	4	24	1.22
322041--322077	19	1.9	19	88	0	56	70	0	0	29	0.88
326214--326334	26	4.7	26	80	4	136	40	19	16	23	1.91
326205--326334	52	2.5	53	86	3	183	41	17	16	24	1.89
326566--326615	26	1.9	26	87	0	73	20	22	22	36	1.96
328467--328524	29	2.0	29	100	0	116	51	6	24	17	1.69
333390--333626	26	9.0	26	80	1	204	39	18	15	26	1.90
333737--333786	26	1.9	26	87	0	73	26	20	18	36	1.95
343962--344009	19	2.3	21	89	10	73	33	4	0	62	1.14
347208--347271	25	2.6	25	87	0	92	48	6	21	23	1.73
357033--357136	30	3.5	30	97	0	190	16	37	25	20	1.93
357745--357793	18	2.8	18	84	3	55	71	6	18	4	1.23
361298--361338	17	2.4	17	100	0	82	9	34	43	12	1.75
361547--361579	17	1.9	17	93	0	57	36	6	18	39	1.75
364891--365005	28	3.9	28	67	18	81	45	16	6	32	1.72
370459--370499	20	2.0	20	95	0	73	36	31	9	21	1.86
374055--374120	29	2.3	28	80	12	80	43	18	6	31	1.74
374149--374254	34	3.1	34	80	2	133	41	18	4	34	1.72
375653--375763	40	2.8	39	78	5	107	41	19	19	18	1.91
375663--375763	39	2.5	40	78	12	100	40	19	19	19	1.92
375823--376107	41	7.0	41	79	2	270	21	17	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375820--376116	123	2.4	121	81	6	312	20	17	29	32	1.95
376217--376276	7	8.7	7	79	3	59	13	1	41	43	1.54
376348--376388	21	2.0	21	85	0	55	19	2	26	51	1.59
377760--377839	31	2.6	31	86	7	117	20	15	21	43	1.87
379549--379575	5	5.4	5	100	0	54	18	0	0	81	0.69
380777--381012	43	5.5	43	81	4	246	25	19	30	25	1.98
380833--380998	85	2.0	85	87	2	244	25	21	27	25	1.99
385112--385159	3	16.0	3	91	0	78	29	0	0	70	0.87
385397--385455	30	2.0	28	83	6	73	40	5	1	52	1.33
387322--387347	13	2.0	13	100	0	52	30	7	15	46	1.74
395360--395846	44	11.0	44	72	5	334	30	19	23	26	1.98
395360--395763	89	4.6	89	76	3	375	31	19	23	25	1.98
395385--395765	133	2.9	133	94	0	672	31	19	23	25	1.98
395385--395895	266	1.9	265	82	3	641	30	19	23	26	1.98
397587--397642	21	2.7	20	78	10	58	28	5	5	60	1.41
397672--397758	25	3.5	25	71	6	79	39	6	3	50	1.46
398097--398121	11	2.3	11	100	0	50	32	0	0	68	0.90
402732--402762	7	4.4	7	95	0	53	16	16	9	58	1.63
403585--403639	13	4.2	13	76	23	62	58	1	0	40	1.09
403598--403655	25	2.3	25	96	0	107	56	1	0	41	1.09
403587--403645	13	4.6	13	71	26	54	59	1	0	38	1.08
404223--404476	42	6.0	42	82	0	283	34	20	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404906--404977	21	3.4	21	86	0	90	5	40	15	38	1.70

Tables:   1   2

The End!