genome.fa.s4080.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold232
Parameters: 2 7 7 80 10 50 1000
Length:  1304497

Tables:   1   2   3   4   

This is table  4  of  4  ( 418 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017504--1017558	15	3.6	15	74	13	58	74	0	12	12	1.07
1048679--1049120	129	3.4	129	94	1	760	31	19	24	25	1.98
1049112--1049529	218	1.9	217	93	0	710	26	18	26	28	1.98
1049117--1049576	218	2.1	217	89	2	692	26	18	26	28	1.98
1049117--1049967	44	19.5	44	70	10	390	27	19	25	27	1.99
1049290--1049793	261	1.9	262	90	1	796	26	19	26	26	1.99
1049552--1050046	217	2.3	217	96	0	909	27	21	25	25	1.99
1049290--1049870	261	2.2	262	86	3	717	27	20	25	25	1.99
1063047--1063093	21	2.2	21	96	0	85	14	12	25	46	1.80
1065463--1065499	18	2.0	19	89	5	58	51	0	40	8	1.32
1068929--1068971	22	2.0	22	95	0	77	55	4	11	27	1.55
1072993--1073183	50	3.8	51	73	4	158	23	27	19	30	1.98
1073516--1073573	30	1.9	30	85	0	80	25	22	10	41	1.85
1080518--1080703	50	3.7	50	80	3	198	21	26	23	28	1.99
1093456--1093520	7	9.1	7	76	8	51	41	40	0	18	1.51
1093916--1093960	14	3.2	14	81	9	56	35	42	0	22	1.54
1093931--1094011	21	3.8	21	73	11	67	39	35	0	24	1.56
1093941--1094004	14	4.5	15	80	9	62	37	35	0	26	1.57
1094147--1094265	7	16.7	7	69	16	57	37	36	0	24	1.62
1094238--1094279	14	2.9	14	89	6	66	35	38	0	26	1.57
1094234--1094280	15	3.3	15	88	8	71	40	34	0	25	1.56
1094491--1094545	25	2.2	25	75	12	60	21	9	7	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094630--1094864	41	5.8	40	83	4	238	31	25	18	23	1.97
1094646--1094874	82	2.8	81	81	4	264	33	27	18	20	1.96
1094850--1094900	26	2.0	26	84	0	66	41	35	13	9	1.78
1094875--1095061	41	4.6	41	80	0	203	34	29	17	19	1.94
1094768--1094962	108	1.8	108	89	4	313	36	27	16	20	1.93
1094727--1095023	149	2.0	149	84	1	389	35	27	17	19	1.94
1094707--1095059	190	1.9	190	83	2	458	33	28	17	20	1.96
1095106--1095218	40	2.8	40	83	2	129	26	21	16	35	1.95
1118378--1118415	18	2.1	18	100	0	76	34	23	15	26	1.95
1119029--1119068	3	13.3	3	83	0	53	7	27	0	65	1.20
1133627--1133816	40	4.8	40	78	0	200	21	27	16	33	1.95
1133627--1133688	20	3.1	20	65	9	54	19	30	20	29	1.97
1140750--1140859	40	2.8	40	86	5	150	23	29	13	33	1.93
1142257--1142297	22	2.0	22	90	9	68	56	0	2	41	1.13
1142356--1142419	32	2.0	32	87	6	94	46	0	20	32	1.51
1150456--1150570	35	3.3	34	77	15	101	27	28	1	41	1.66
1150614--1150688	25	3.0	25	86	0	105	18	49	10	21	1.77
1150824--1150868	20	2.2	21	84	7	58	17	2	13	66	1.34
1170129--1170158	11	2.7	11	89	0	51	83	0	10	6	0.81
1183650--1183710	20	3.0	20	81	9	70	27	24	13	34	1.93
1183650--1183707	10	5.7	10	74	11	55	29	25	13	31	1.94
1198930--1198980	24	2.2	23	82	10	59	45	13	17	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1202653--1202691	11	3.1	14	82	17	50	12	5	7	74	1.20
1207463--1207497	18	2.1	16	89	10	52	11	5	8	74	1.22
1209713--1209752	21	1.9	21	84	0	53	5	22	2	70	1.19
1211751--1211805	29	2.0	27	86	13	76	60	9	14	16	1.59
1218547--1218603	12	4.8	12	73	16	55	70	1	15	12	1.25
1218594--1218650	27	2.2	26	81	6	62	61	0	26	12	1.31
1235172--1235222	15	3.5	15	83	5	68	72	1	21	3	1.11
1235253--1235283	6	5.2	6	92	0	53	80	0	19	0	0.71
1238948--1238982	12	2.8	12	95	4	61	68	8	5	17	1.35
1254777--1254813	16	2.1	18	85	14	51	13	21	2	62	1.44
1262714--1262755	21	1.9	21	90	9	66	71	2	7	19	1.20
1262713--1262757	11	4.0	11	82	11	56	68	2	8	20	1.27
1264016--1264297	144	2.0	144	88	2	424	31	21	19	27	1.97
1304445--1304491	18	2.6	18	80	12	60	21	19	0	59	1.38

Tables:   1   2   3   4

The End!