genome.fa.s409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  507797

Tables:   1   2   

This is table  1  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465--736	125	2.2	125	99	0	535	43	3	2	49	1.35
1330--1361	16	2.0	16	93	0	55	28	0	6	65	1.16
4221--4287	34	2.0	34	82	5	82	32	23	10	32	1.89
8336--8362	13	2.1	13	100	0	54	25	7	22	44	1.79
10728--10779	21	2.3	23	80	9	63	1	34	0	63	1.06
20286--20376	45	2.0	45	85	2	121	37	28	6	27	1.82
20357--20392	16	2.2	16	100	0	72	38	36	0	25	1.56
23413--23472	30	2.0	31	90	3	95	41	0	38	20	1.52
47879--47927	25	2.0	25	95	0	89	40	20	6	32	1.77
50466--50497	11	2.6	13	90	9	50	46	3	6	43	1.44
50445--50578	66	2.0	67	98	1	261	32	11	16	39	1.84
50532--50563	11	2.6	13	90	9	50	46	3	6	43	1.44
56214--56279	8	8.4	8	73	18	50	45	1	1	51	1.19
56211--56276	7	8.6	7	76	18	53	43	1	1	53	1.19
56230--56289	30	1.9	32	83	6	79	45	1	5	48	1.34
57180--57315	37	3.5	40	73	10	111	25	14	27	32	1.95
57182--57315	40	3.4	40	72	9	114	25	14	28	32	1.94
67345--67390	12	3.8	12	76	23	51	50	0	0	50	1.00
67349--67389	20	2.0	21	85	4	57	53	0	0	46	1.00
68237--68280	19	2.3	19	96	0	79	27	36	4	31	1.77
69742--70090	39	9.0	39	77	4	330	14	18	31	35	1.91
69742--70076	158	2.1	154	80	6	356	14	18	31	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72754--72783	8	3.8	8	95	0	51	43	0	16	40	1.48
73575--73618	19	2.3	19	96	0	79	27	36	4	31	1.77
75080--75428	39	9.0	39	77	4	330	14	18	31	35	1.91
75080--75414	158	2.1	154	80	6	356	14	18	31	35	1.91
78092--78121	8	3.8	8	95	0	51	43	0	16	40	1.48
78564--78593	8	3.8	8	95	0	51	43	0	16	40	1.48
79541--79603	26	2.6	23	80	14	74	26	25	17	30	1.97
86805--86880	38	2.0	38	100	0	152	18	26	23	31	1.97
91974--92008	9	3.9	9	88	0	52	51	5	0	42	1.25
91983--92022	21	2.1	18	86	13	53	52	7	0	40	1.30
92126--92187	14	4.4	14	81	6	63	40	0	1	58	1.08
106896--106957	25	2.5	25	94	0	106	58	1	3	37	1.24
107464--107587	39	3.2	39	63	15	101	39	7	5	47	1.55
107427--107595	79	2.1	80	97	2	322	40	6	4	47	1.50
109367--109404	14	2.7	14	84	12	51	57	0	5	36	1.21
109387--109433	24	2.0	24	87	8	69	61	6	0	31	1.21
130089--130221	28	4.8	28	80	7	94	28	14	23	33	1.94
130113--130221	28	3.9	28	84	3	130	27	12	23	35	1.92
130124--130319	29	6.9	29	78	8	131	28	10	22	38	1.87
130238--130337	29	3.4	29	83	0	128	23	13	22	42	1.88
130152--130355	29	7.1	29	76	7	98	25	13	22	38	1.91
135153--135269	57	2.1	57	81	3	137	30	18	5	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138007--138040	16	2.1	16	88	0	50	35	14	8	41	1.77
138067--138102	15	2.5	15	90	4	56	41	16	8	33	1.78
147135--147182	17	2.8	17	87	0	69	43	0	39	16	1.48
151357--151387	9	3.4	9	90	0	53	25	12	22	38	1.90
151441--151477	9	4.1	9	92	0	65	45	13	10	29	1.77
153438--153482	17	2.6	17	92	0	81	13	31	28	26	1.94
154613--154680	31	2.1	33	83	5	86	39	22	2	35	1.69
154935--155070	40	3.4	39	76	9	123	30	23	18	27	1.97
155893--155934	4	11.0	4	85	10	61	0	21	0	78	0.75
155974--156029	17	2.8	21	70	30	50	30	7	0	62	1.22
161343--161387	22	2.0	23	86	4	65	33	20	4	42	1.72
171539--171759	87	2.5	85	84	9	275	36	23	9	31	1.87
171837--171880	21	2.0	22	83	12	56	45	0	4	50	1.22
172138--172165	11	2.5	11	100	0	56	17	7	0	75	1.03
172245--172413	87	1.9	88	84	3	225	33	8	18	39	1.81
175232--175273	15	2.8	15	85	0	57	54	0	11	33	1.37
180889--180989	35	2.9	35	81	0	121	17	16	27	37	1.92
188388--188427	19	2.0	21	85	9	57	25	30	5	40	1.77
198739--199188	230	2.0	230	99	0	882	40	15	16	28	1.88
199775--199962	94	2.0	94	98	0	367	45	12	14	27	1.81
207890--207926	18	2.0	19	89	5	58	51	0	43	5	1.24
208680--208943	90	2.9	90	98	0	501	36	16	15	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209673--209755	27	3.1	26	83	10	87	24	19	19	37	1.94
209706--209768	27	2.3	27	89	5	92	17	14	20	47	1.82
215118--215176	30	2.0	30	89	0	91	45	10	8	35	1.68
226091--226121	9	3.4	9	90	0	53	25	12	22	38	1.90
226175--226211	9	4.1	9	92	0	65	45	13	10	29	1.77
227051--227076	3	8.7	3	100	0	52	69	0	0	30	0.89
231913--232097	38	4.7	37	69	18	106	43	1	5	49	1.32
231723--232136	121	3.4	121	99	0	812	43	0	4	51	1.26
232267--232356	45	2.0	45	87	6	130	34	26	5	33	1.80
232336--232400	16	4.1	16	93	0	112	23	33	6	36	1.80
251863--251954	27	3.4	28	80	5	91	19	7	14	58	1.59
269581--269620	21	1.9	21	84	0	53	32	5	2	60	1.32
272802--272841	19	2.1	19	85	0	53	20	2	12	65	1.38
272821--272921	26	4.0	26	80	5	89	25	5	6	61	1.45
272843--272917	24	3.1	23	84	5	78	28	8	4	60	1.43
274983--275031	20	2.5	20	80	16	57	77	8	2	12	1.07
275800--275856	23	2.4	25	85	11	75	15	1	8	73	1.16
275822--275884	19	2.9	23	84	13	73	28	0	4	66	1.12
287232--287261	15	2.1	15	93	6	53	53	6	0	40	1.27
289278--289330	21	2.6	21	75	16	58	43	13	7	35	1.72
290134--290200	32	2.1	32	84	15	86	20	1	20	56	1.50
292699--292765	32	2.1	32	84	15	86	20	1	20	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296076--296345	136	2.0	136	96	0	495	28	21	20	29	1.98
298103--298403	150	2.0	151	98	0	577	43	3	10	42	1.56
313546--313574	2	14.5	2	100	0	58	51	0	0	48	1.00
315094--315145	3	17.3	3	100	0	104	67	0	0	32	0.91
315139--315219	42	2.0	39	94	2	110	43	16	4	30	1.68
317655--317693	19	2.0	20	85	5	53	35	5	0	58	1.20
324141--324188	22	2.2	22	82	14	55	56	8	8	27	1.57
324922--325078	54	2.8	56	80	3	192	26	15	19	38	1.92
328064--328126	25	2.6	25	79	2	74	34	17	26	20	1.95
329746--330249	23	21.5	23	70	10	238	41	17	14	26	1.88
329760--330132	70	5.3	70	89	2	516	41	17	13	27	1.86
330096--330249	70	2.2	70	91	2	247	43	16	17	22	1.88
330166--330259	47	2.0	47	87	0	134	41	18	18	22	1.90
340548--340691	23	6.2	22	75	11	119	43	35	4	17	1.68
340971--341032	30	2.1	30	90	0	97	29	24	9	37	1.87
343238--343374	23	5.9	23	72	9	109	43	34	4	18	1.70
344658--344711	23	2.4	22	81	3	63	59	3	1	35	1.26
346989--347031	19	2.2	20	84	12	63	32	20	0	46	1.51
347721--347789	22	3.1	22	88	10	97	44	17	21	15	1.86
347782--347819	19	2.0	19	94	0	67	34	10	28	26	1.90
347802--347897	25	3.8	25	97	0	174	35	18	25	20	1.95
347725--347897	44	3.7	48	80	13	177	38	17	24	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366544--366574	5	6.2	5	92	0	53	77	0	3	19	0.90
370588--370648	31	1.9	32	83	3	79	47	1	1	49	1.21
370937--370976	21	1.9	21	94	0	71	25	17	27	30	1.97
372676--372715	21	1.9	21	89	0	62	57	10	7	25	1.57
377100--377194	21	4.5	21	76	5	57	45	17	22	14	1.85
377102--377228	42	3.0	42	82	4	157	44	17	22	16	1.87
383214--383394	91	2.0	91	97	0	344	32	8	17	40	1.81
383930--384002	32	2.5	27	76	19	83	24	2	19	53	1.58
383943--384003	32	1.9	32	93	0	104	26	3	18	52	1.60
385363--385402	18	2.2	19	90	4	64	47	10	12	30	1.74

Tables:   1   2