genome.fa.s409.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  507797

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385386--385423	14	2.7	14	91	0	58	39	15	5	39	1.70
389946--390007	30	2.1	30	96	0	115	50	3	17	29	1.62
412712--412743	3	10.7	3	100	0	64	68	0	0	31	0.90
426734--427517	264	3.0	261	80	5	842	29	16	15	37	1.90
426778--427553	265	2.9	262	80	5	864	29	16	15	38	1.90
427600--428137	260	2.0	263	83	4	674	31	17	13	37	1.89
433482--433520	12	3.1	12	85	7	51	43	12	0	43	1.42
433466--433529	9	7.2	9	75	13	62	43	10	3	42	1.55
433656--433860	103	2.0	103	86	1	286	21	16	15	46	1.84
433965--434067	50	2.1	50	96	0	188	16	13	13	56	1.68
443411--443443	5	6.4	5	96	3	57	78	0	0	21	0.75
444212--444263	18	2.8	18	91	2	77	50	3	0	46	1.20
452033--452118	38	2.2	38	95	2	154	41	18	9	30	1.82
453351--453435	43	2.0	43	83	4	109	35	25	18	20	1.95
461352--461449	43	2.3	44	82	7	112	34	24	16	24	1.95
463287--463677	84	4.7	84	81	5	386	47	10	10	31	1.73
463767--464172	89	4.8	87	77	12	327	43	12	14	28	1.82
466344--466416	25	2.9	25	93	2	119	36	6	8	47	1.60
469520--469581	30	2.1	30	93	0	106	24	14	22	38	1.91
470442--470512	28	2.5	28	77	6	72	35	0	5	59	1.21
471511--471550	20	2.0	20	90	0	62	27	10	12	50	1.72
471496--471562	34	1.9	35	87	3	100	32	8	11	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473658--473711	28	2.0	27	85	3	72	44	3	38	12	1.61
482318--482354	19	2.0	19	94	5	67	18	37	16	27	1.92
487663--488028	103	3.6	102	92	2	583	33	29	19	16	1.95
487872--487953	27	2.7	30	82	12	98	34	31	20	13	1.91
490628--490667	5	8.0	5	97	0	62	40	0	25	35	1.56
492426--492456	16	1.9	16	93	0	53	41	0	25	32	1.56
500985--501170	43	4.3	43	86	2	185	27	30	15	26	1.96
501019--501183	86	1.9	86	85	3	224	29	32	12	26	1.93
501019--501183	43	3.8	42	85	4	195	29	32	12	26	1.93
501259--501285	13	2.1	13	100	0	54	51	7	0	40	1.30
506231--506276	16	2.9	16	80	6	58	58	0	4	36	1.18

Tables:   1   2

The End!