genome.fa.s4136.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold286
Parameters: 2 7 7 80 10 50 1000
Length:  607008

Tables:   1   2   

This is table  2  of  2  ( 173 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355521--355545	12	2.1	12	100	0	50	24	36	24	16	1.94
355706--355756	9	5.7	9	90	0	75	39	25	11	23	1.89
361512--361572	31	2.0	31	83	6	79	49	4	4	40	1.46
362420--362493	37	2.0	37	81	5	87	31	18	8	41	1.80
363377--363848	182	2.6	182	90	1	714	34	13	20	32	1.91
363677--364208	208	2.6	203	82	5	629	31	12	21	34	1.91
367631--367952	168	1.9	168	83	2	414	27	11	15	45	1.81
368254--368591	86	3.9	86	85	1	392	31	8	17	42	1.79
368606--368690	40	2.1	40	86	4	118	30	5	12	50	1.64
369112--369182	29	2.5	29	77	11	74	29	9	22	38	1.86
393001--393040	14	2.9	14	88	3	55	7	25	0	67	1.16
397909--397973	34	1.9	34	87	6	96	40	15	7	36	1.76
406938--407003	30	2.2	30	81	5	80	43	12	6	37	1.67
409445--409484	20	2.0	20	100	0	80	30	20	20	30	1.97
415945--416007	23	2.7	23	75	4	56	53	3	0	42	1.16
418092--418185	42	2.2	42	81	9	102	29	24	17	28	1.97
418085--418242	43	3.7	42	75	11	133	31	25	16	26	1.96
419316--419613	69	4.5	68	75	11	283	34	19	6	40	1.77
419383--419496	60	1.9	60	85	7	160	35	16	7	40	1.76
419392--419511	60	2.0	59	82	4	143	35	18	7	39	1.79
426788--426827	19	2.2	18	86	13	55	82	0	2	15	0.77
429668--429709	20	2.2	19	86	4	57	30	2	2	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438252--438283	15	2.1	15	94	0	55	40	12	0	46	1.42
443225--443254	7	4.1	7	95	4	51	26	33	0	40	1.57
445101--445135	5	7.0	5	100	0	70	60	0	0	40	0.97
445840--445884	23	2.0	23	86	8	65	60	0	17	22	1.37
465286--465328	19	2.3	19	92	8	70	39	6	16	37	1.75
483996--484025	2	15.0	2	100	0	60	50	0	0	50	1.00
485038--485088	25	2.0	25	100	0	102	45	3	23	27	1.70
485043--485098	25	2.2	25	90	3	85	50	3	21	25	1.65
501140--501224	1	85.0	1	90	0	134	95	0	4	0	0.27
501139--501238	17	5.2	21	86	8	78	89	3	7	1	0.64
509046--509086	21	1.9	22	85	5	57	26	19	31	21	1.97
510634--510674	21	1.9	22	85	5	57	26	19	31	21	1.97
513029--513069	21	1.9	22	85	5	57	26	19	31	21	1.97
517061--517121	30	1.9	32	83	9	81	24	11	14	49	1.77
524069--524108	20	2.2	19	86	13	57	35	22	2	40	1.68
525316--525347	6	5.3	6	96	0	55	3	15	15	65	1.39
525779--525816	6	6.8	6	82	17	55	0	68	15	15	1.22
525900--525937	14	2.7	14	87	0	58	2	26	0	71	1.00
542124--542199	36	2.1	36	100	0	152	55	9	28	6	1.57
544313--544371	21	3.1	21	72	27	76	20	22	5	52	1.65
544331--544360	15	2.0	15	100	0	60	20	13	6	60	1.55
552246--552302	25	2.3	25	84	0	69	40	12	5	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552563--552621	23	2.6	23	83	0	73	32	20	27	20	1.97
556159--556234	28	2.7	28	83	0	98	30	18	17	34	1.94
558958--559024	31	2.2	30	79	10	73	38	10	13	37	1.79
558975--559037	31	2.0	31	96	0	117	33	11	12	42	1.78
559129--559202	36	2.1	36	97	0	139	45	16	16	21	1.84
563576--563600	11	2.3	11	100	0	50	44	16	12	28	1.83
571900--571942	2	21.5	2	95	0	77	46	0	53	0	1.00
587019--587086	33	2.1	33	100	0	136	26	19	4	50	1.66
587513--587655	75	1.9	75	92	0	241	47	12	8	31	1.71

Tables:   1   2

The End!