genome.fa.s4257.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold461
Parameters: 2 7 7 80 10 50 1000
Length:  420647

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307951--307993	21	2.0	21	100	0	86	27	0	18	53	1.45
315809--315875	33	2.0	33	88	0	98	17	28	17	35	1.93
327206--327260	27	2.1	25	83	6	65	32	3	0	63	1.12
329372--329409	20	1.9	20	88	0	58	71	2	0	26	1.00
332419--332450	3	10.7	3	100	0	64	0	31	34	34	1.58
332692--332757	33	2.0	33	96	0	123	21	28	6	43	1.76
344903--344966	18	3.7	18	72	8	69	31	21	21	25	1.98
354477--354666	61	3.1	59	79	6	159	35	6	15	42	1.73
354980--355050	22	3.2	22	88	7	108	33	28	1	36	1.66
355021--355079	30	2.0	30	96	0	109	32	35	0	32	1.58
354999--355101	52	2.0	51	84	5	136	33	32	0	33	1.65
355051--355092	22	1.9	22	90	0	66	33	33	0	33	1.58
355136--355199	29	2.2	29	83	5	85	40	0	1	57	1.08
355290--355323	15	2.3	15	90	5	52	26	0	5	67	1.13
356236--356260	7	3.6	7	100	0	50	28	0	12	60	1.32
357149--357219	34	2.1	34	97	0	133	26	23	16	32	1.96
357479--357652	23	6.7	23	71	21	114	42	23	1	32	1.64
357462--357694	29	8.3	29	71	17	179	41	22	2	33	1.66
357529--357619	30	3.1	30	81	9	114	42	26	2	28	1.67
360839--361116	124	2.3	123	83	5	355	30	24	15	29	1.95
364001--364049	7	6.9	7	76	4	53	48	30	0	20	1.50
363930--364020	35	2.5	35	75	18	89	41	34	2	21	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373695--373749	27	2.1	25	83	6	65	34	3	0	61	1.13
375825--375864	20	2.0	20	90	0	62	72	0	2	25	0.97
375833--375862	14	2.1	14	93	0	51	76	0	0	23	0.78
377950--377980	3	10.3	3	100	0	62	32	0	0	67	0.91
378236--378296	16	3.8	16	82	4	77	37	8	1	52	1.41
378371--378441	35	2.0	35	89	5	108	28	11	5	54	1.58
379000--379133	72	1.9	72	85	6	191	31	18	14	35	1.92
380324--380382	16	3.6	16	77	4	64	50	1	10	37	1.46
381504--381621	45	2.7	44	85	2	155	31	21	18	28	1.97
381455--381639	44	4.2	44	75	7	135	30	23	15	30	1.95
381783--382238	45	10.2	45	87	2	560	26	25	19	27	1.99
382339--382444	43	2.4	44	85	3	133	30	25	17	26	1.98
383779--383832	9	6.4	9	81	14	62	0	24	0	75	0.80
383782--383828	3	15.7	3	90	0	76	0	27	0	72	0.85
383772--383828	15	3.7	15	92	2	87	1	24	0	73	0.92
384808--384873	33	2.0	33	100	0	132	24	30	15	30	1.95
389622--389792	84	2.0	85	97	1	326	40	18	8	32	1.81
392719--392755	16	2.4	16	86	8	51	72	13	8	5	1.24
399287--399316	15	2.1	14	93	6	51	50	0	0	50	1.00
399596--399753	79	2.0	79	96	2	291	45	6	6	40	1.58
402983--403193	75	2.8	75	88	0	305	30	27	19	22	1.98
403093--403320	102	2.2	102	93	1	386	29	28	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403270--403321	27	1.9	27	100	0	104	26	32	25	15	1.95
404418--404591	89	2.0	89	93	1	296	35	20	14	30	1.92
405368--405680	159	2.0	157	94	1	545	36	10	12	40	1.77
405718--405777	30	2.0	30	90	6	95	56	0	1	41	1.09
409504--409550	14	3.4	14	77	11	51	25	0	0	74	0.82
410133--410161	3	9.7	3	100	0	58	31	0	34	34	1.58
410746--411030	142	2.0	142	100	0	570	40	7	7	44	1.60
419435--419481	19	2.5	19	86	6	60	10	14	4	70	1.31

Tables:   1   2

The End!