genome.fa.s4324.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold266
Parameters: 2 7 7 80 10 50 1000
Length:  653600

Tables:   1   2   3   

This is table  2  of  3  ( 242 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329412--329471	21	3.0	21	92	4	97	36	11	15	36	1.83
329421--329505	21	4.0	22	79	14	81	37	7	16	38	1.76
329471--329515	23	2.0	23	86	4	65	33	4	15	46	1.66
329942--329981	3	13.3	3	84	10	55	32	0	0	67	0.91
329926--329980	15	3.7	15	74	16	53	30	0	1	67	1.01
329928--329979	12	4.1	12	80	14	52	28	0	1	69	0.99
330249--330348	52	1.9	51	82	9	123	30	7	8	55	1.56
336794--336826	6	5.5	6	100	0	66	84	0	0	15	0.61
336979--337205	44	5.2	44	63	8	111	25	31	23	18	1.98
336965--337523	88	6.4	88	91	0	839	27	28	23	20	1.99
337023--337254	44	5.3	44	63	8	121	24	28	25	21	1.99
337332--337474	44	3.2	44	64	11	112	25	32	23	18	1.97
337524--337883	44	8.2	44	86	2	483	28	16	27	28	1.97
337524--337846	88	3.7	88	94	1	542	28	16	26	28	1.97
338190--338297	44	2.5	44	80	3	119	31	21	17	29	1.96
338728--338779	20	2.6	21	85	11	74	40	9	15	34	1.80
338758--338802	23	2.0	23	91	4	74	37	4	17	40	1.70
338768--338812	23	2.0	23	86	4	65	33	4	15	46	1.66
338980--339018	19	1.9	19	85	10	51	15	12	5	66	1.41
339222--339277	15	3.8	15	79	9	62	26	0	3	69	1.04
341026--341110	21	4.0	21	84	3	89	52	16	28	2	1.56
345333--345385	26	2.0	26	96	0	97	33	16	15	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348855--348914	19	3.1	19	83	13	70	25	13	3	58	1.50
352463--352490	2	14.0	2	100	0	56	50	0	0	50	1.00
354680--354709	13	2.3	13	94	0	51	50	23	16	10	1.75
361025--361134	23	4.9	23	85	5	118	20	20	22	36	1.95
363795--363849	28	2.0	27	82	10	67	54	12	7	25	1.63
365118--365158	19	2.3	17	87	8	55	17	7	0	75	1.02
374005--374058	28	2.0	27	85	10	74	37	1	1	59	1.19
377202--377244	3	14.0	3	90	4	68	30	0	0	69	0.88
377353--377378	7	3.7	7	100	0	52	26	0	0	73	0.84
377417--377457	15	2.8	14	85	10	55	26	4	0	68	1.10
377417--377457	14	2.7	15	88	7	57	26	4	0	68	1.10
377446--377479	10	3.2	10	88	12	50	38	0	0	61	0.96
385519--385552	14	2.4	14	85	0	50	52	5	8	32	1.56
385883--385942	27	2.2	27	96	0	111	31	28	18	21	1.97
387463--387507	22	2.1	22	95	4	83	28	4	8	57	1.48
387851--388983	111	10.2	109	79	7	1115	29	16	19	35	1.93
387852--388983	331	3.4	327	80	7	1175	29	16	19	35	1.93
387851--388983	223	5.1	221	81	5	1141	29	16	19	35	1.93
388794--389000	115	1.8	115	83	0	279	30	16	19	33	1.94
391874--391992	56	2.2	55	83	5	152	56	2	12	28	1.49
396136--396203	33	2.1	33	94	0	118	32	26	26	14	1.95
399582--399636	28	2.0	28	92	7	94	32	0	14	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400168--400222	28	2.0	28	96	0	101	40	9	18	32	1.82
409341--409371	15	2.1	15	100	0	62	32	6	12	48	1.67
411132--411196	32	2.0	32	93	0	112	26	3	16	53	1.58
426658--426697	18	2.2	18	86	8	55	20	0	12	67	1.22
430699--430757	21	2.8	20	80	14	57	54	3	3	38	1.34
430737--430864	40	3.2	39	81	7	166	63	0	3	32	1.13
430822--430847	11	2.4	11	100	0	52	53	0	7	38	1.30
432213--432255	20	2.2	20	95	0	77	23	27	20	27	1.99
448118--448176	14	4.1	14	79	14	66	62	0	1	35	1.05
448444--448495	26	2.0	27	96	3	97	40	3	0	55	1.18
448444--448513	26	2.5	29	84	15	87	44	4	0	51	1.21
448574--448644	27	2.6	27	88	4	99	26	26	29	16	1.97
448689--448998	65	4.8	65	95	3	538	66	0	33	0	0.92
448721--448922	43	4.6	47	72	17	202	66	0	33	0	0.92
448685--448947	18	14.3	18	67	20	129	65	0	34	0	0.93
449686--449741	27	2.1	27	89	0	85	44	12	32	10	1.77
456458--456563	3	35.7	3	77	12	94	65	25	0	9	1.23
456698--456726	10	2.7	11	89	10	51	0	27	0	72	0.85
456826--456911	27	3.2	27	86	0	109	11	30	31	26	1.92
456958--457028	27	2.6	27	88	8	99	46	0	9	43	1.37
459682--459735	19	2.7	19	80	5	63	57	7	0	35	1.27
463012--463100	30	3.0	30	83	0	106	14	28	32	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463907--463932	11	2.4	11	100	0	52	7	0	0	92	0.39
464835--464941	6	17.8	6	93	3	144	79	4	0	14	0.94
466556--466683	15	8.9	15	72	22	64	71	5	3	20	1.20
466594--466689	34	2.8	34	84	7	106	72	3	3	20	1.12
466614--466690	15	4.6	17	77	18	65	72	2	1	23	1.04
466577--466690	12	9.2	12	74	15	65	72	3	2	21	1.11
470484--470525	5	8.4	5	100	0	84	80	0	0	19	0.70
475741--475773	12	2.6	13	90	4	50	18	6	0	75	1.00
485518--485555	18	2.0	21	85	15	55	28	0	15	55	1.41
494266--494518	27	9.4	27	85	2	321	42	20	17	20	1.90
501534--501683	59	2.5	59	84	4	194	30	22	11	36	1.89
505508--505550	21	2.1	21	87	8	63	16	4	23	55	1.59
527824--527871	25	2.0	25	88	12	73	16	10	2	70	1.24
527851--527885	12	3.0	12	87	4	54	28	8	0	62	1.24
544144--544187	20	2.2	20	88	4	63	75	2	2	20	1.03
549526--549640	50	2.3	49	82	7	151	25	24	20	30	1.98
549528--549640	25	4.6	24	74	13	104	24	23	20	30	1.98
552336--552370	18	1.9	18	88	11	54	51	0	5	42	1.25
557998--558067	25	2.8	25	86	0	104	24	24	24	27	2.00
566572--566702	41	3.2	41	78	4	158	35	25	19	19	1.95
568144--568342	29	6.8	29	84	2	220	36	15	26	22	1.93
571681--571816	40	3.4	40	88	0	173	27	13	27	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573766--573973	45	4.6	44	75	7	141	19	22	15	42	1.89
573935--574007	24	3.2	24	67	11	62	21	15	16	46	1.83
579407--579533	41	3.1	41	85	2	130	34	26	21	17	1.95
579511--579548	16	2.4	16	95	0	67	31	31	21	15	1.94
579782--579943	45	3.6	45	78	7	161	22	19	15	42	1.88
579908--580033	45	2.8	44	84	2	144	20	19	16	43	1.88
589154--589301	74	2.0	74	88	4	217	41	14	8	35	1.75
591758--591791	6	5.7	6	92	0	59	17	26	0	55	1.42
599537--599576	13	3.1	13	85	0	53	70	2	27	0	1.01
600669--600754	43	2.0	43	93	0	145	51	3	25	19	1.63
600727--600777	18	2.7	19	87	6	68	52	1	25	19	1.56
600742--600796	27	2.0	27	82	6	67	49	1	25	23	1.60
600729--600777	19	2.6	19	87	6	64	53	2	24	20	1.56
601260--601304	23	1.9	22	86	13	63	22	11	28	37	1.88
601619--601738	54	2.2	54	83	2	152	25	24	31	18	1.97
611188--611252	34	1.9	34	93	0	112	41	21	13	23	1.89
613226--613316	42	2.2	42	92	2	148	37	17	19	25	1.94
616504--616634	28	4.7	28	83	0	127	32	25	21	21	1.98
616508--616641	56	2.4	56	84	0	160	33	24	20	21	1.97
616536--616643	56	1.9	56	88	0	162	36	24	17	22	1.95
616751--616830	26	3.1	26	85	3	117	42	23	13	20	1.88
616976--617387	27	15.3	27	77	8	286	17	18	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623828--623861	18	1.9	18	94	5	61	8	41	32	17	1.80
625672--625821	43	3.5	43	79	3	160	32	22	15	30	1.94
625783--625916	48	3.0	44	80	8	169	31	23	17	27	1.97
632018--632165	43	3.4	43	86	1	199	31	23	14	30	1.95
632018--632177	85	1.9	87	82	2	207	31	23	14	30	1.94
632135--632315	48	3.8	48	80	2	202	29	20	17	32	1.96
632135--632314	96	1.9	96	84	2	245	30	20	17	32	1.95
632310--632404	32	3.1	30	76	7	109	47	16	6	29	1.71
641817--641845	9	3.0	10	90	10	51	58	0	20	20	1.39
642552--642600	24	2.0	24	88	0	71	46	10	12	30	1.74

Tables:   1   2   3