genome.fa.s4394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold298
Parameters: 2 7 7 80 10 50 1000
Length:  553964

Tables:   1   2   

This is table  1  of  2  ( 139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4466--4503	6	6.3	6	93	6	60	2	15	15	65	1.38
18309--18359	24	2.1	24	85	7	68	45	0	1	52	1.12
21606--21658	20	2.7	20	85	11	65	60	9	0	30	1.28
21626--21663	19	2.1	18	90	5	58	57	7	0	34	1.28
21605--21692	20	4.2	20	73	21	63	61	6	1	30	1.29
21940--21978	19	2.1	19	85	0	51	64	5	0	30	1.15
22717--22792	9	8.4	9	81	5	91	27	10	23	38	1.88
25667--25719	10	5.0	11	74	21	51	64	1	1	32	1.15
31788--32173	177	2.2	176	91	2	630	38	19	23	19	1.94
33729--33773	24	1.9	23	86	4	63	62	0	0	37	0.96
34537--34574	18	2.2	17	90	4	58	44	2	13	39	1.57
35804--35873	32	2.2	32	90	5	108	54	11	12	21	1.69
41966--42000	16	2.2	16	90	10	54	45	0	0	54	0.99
45540--45585	17	2.7	17	81	15	51	58	2	0	39	1.10
45759--45785	7	3.9	7	100	0	54	88	0	11	0	0.50
46096--46608	222	2.3	221	81	5	592	38	17	16	26	1.91
46121--46627	113	4.6	113	81	10	537	36	17	16	28	1.92
46343--46675	113	3.0	113	88	3	383	36	18	16	28	1.93
50374--50476	48	2.1	50	87	5	147	32	25	16	26	1.96
56502--56561	29	2.1	29	100	0	120	41	13	13	31	1.83
65294--65341	19	2.6	17	79	20	53	50	4	0	45	1.21
65694--65768	33	2.2	34	83	2	89	40	9	4	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86752--86818	33	2.0	33	100	0	134	49	20	5	23	1.71
90482--90547	34	1.9	34	96	0	123	31	34	16	16	1.92
98002--98034	14	2.3	15	94	5	59	33	24	6	36	1.80
103086--103131	22	2.1	22	87	0	65	43	4	10	41	1.59
103356--103395	18	2.2	18	90	0	62	45	10	20	25	1.81
106886--106938	19	2.8	18	78	15	54	30	1	0	67	1.01
107674--107748	37	2.0	37	92	0	123	38	10	22	28	1.87
112242--112294	27	2.0	27	85	10	74	26	16	1	54	1.53
112968--113002	17	2.1	17	88	0	52	2	40	37	20	1.67
123660--123727	34	2.0	35	82	2	84	16	5	33	44	1.72
131864--131902	20	2.0	19	95	5	69	41	15	5	38	1.69
133232--133839	239	2.6	230	83	3	732	45	16	7	30	1.74
134428--134494	34	1.9	35	87	3	100	44	11	8	34	1.73
139248--139357	51	2.2	51	83	3	132	40	6	14	38	1.72
143047--143089	21	2.0	23	86	9	63	23	2	6	67	1.27
146473--146520	11	4.4	11	81	0	51	64	8	8	18	1.46
146526--146573	20	2.4	20	82	0	60	62	18	12	6	1.50
147834--147881	11	4.4	11	81	0	51	64	8	8	18	1.46
147887--147934	20	2.4	20	82	0	60	62	18	12	6	1.50
151445--151480	6	5.8	6	96	3	63	19	0	0	80	0.71
153883--154016	60	2.2	60	83	7	157	26	13	11	48	1.76
154407--154533	31	4.2	30	69	6	94	48	15	12	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159770--159937	42	4.0	42	100	0	336	38	16	16	28	1.91
161279--161669	175	2.2	174	90	2	606	24	20	23	32	1.98
167546--167637	45	2.0	45	93	0	157	36	18	20	23	1.94
179943--179967	13	1.9	13	100	0	50	24	16	36	24	1.94
180221--180301	28	2.9	28	76	10	67	24	7	32	35	1.83
188100--188143	16	2.6	17	82	17	56	59	2	0	38	1.10
188107--188145	16	2.5	15	91	8	60	64	0	0	35	0.94
188113--188167	26	2.2	26	80	9	60	63	0	1	34	1.05
189893--189937	20	2.1	22	84	12	58	13	11	8	66	1.44
194203--194239	14	2.8	13	88	8	56	43	5	13	37	1.67
194220--194276	22	2.7	20	79	12	60	45	5	8	40	1.58
215790--215848	28	2.2	27	87	6	84	40	20	16	22	1.91
217176--217232	19	2.9	19	84	7	71	42	1	3	52	1.28
236915--236956	2	21.0	2	95	0	75	47	0	52	0	1.00
238238--238275	18	2.2	18	85	4	51	44	2	2	50	1.30
238641--238675	18	2.0	18	88	5	54	31	0	11	57	1.34
248325--248383	29	2.0	29	86	3	82	55	11	3	28	1.52
256430--256469	14	2.9	14	84	0	53	32	7	17	42	1.77
256453--256492	20	2.0	20	90	0	62	27	10	12	50	1.72
256438--256504	34	1.9	35	90	3	109	31	8	13	46	1.74
256432--256508	14	5.0	15	71	20	52	32	9	15	42	1.78
262433--262500	21	3.4	21	76	11	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262445--262509	21	3.2	21	79	10	73	49	0	0	50	1.00
273008--273127	41	2.9	39	81	9	132	29	18	23	29	1.98
273441--273469	2	14.5	2	100	0	58	48	0	0	51	1.00
275495--275651	86	1.8	85	84	9	212	24	17	24	33	1.97
275488--275651	43	3.8	42	77	9	172	24	17	25	32	1.97
275497--275674	86	2.1	86	79	8	184	24	17	24	33	1.96
278144--278321	10	18.3	9	67	20	74	57	0	1	41	1.06
278143--278319	11	17.9	11	71	25	137	57	0	1	41	1.06
278178--278323	28	5.1	28	91	4	222	58	0	0	41	1.03
278178--278308	17	8.0	17	68	28	97	58	0	0	40	1.03
282914--282957	6	7.3	6	100	0	88	52	0	15	31	1.44
289056--289566	258	2.0	258	96	0	943	36	21	11	30	1.88
290514--290573	30	2.0	30	96	0	111	45	10	13	31	1.76
292354--292403	3	16.7	3	95	0	91	68	2	0	30	1.01
303807--303840	6	5.8	6	96	3	61	52	11	0	35	1.38
303807--303846	18	2.2	18	86	8	55	57	10	0	32	1.32
303836--303888	25	2.2	25	79	3	63	69	3	1	24	1.15
303854--303893	21	1.9	21	84	0	53	70	7	2	20	1.24
304115--304160	14	3.2	14	80	19	51	69	0	4	26	1.07
304147--304186	21	1.9	21	84	0	53	70	7	2	20	1.24
303679--304262	294	2.0	292	82	3	717	47	13	9	29	1.75
306975--307009	16	2.2	16	89	0	52	8	28	5	57	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309779--309803	6	4.2	6	100	0	50	32	52	16	0	1.44
318940--318990	22	2.3	22	83	6	59	15	29	17	37	1.91
325606--325647	20	2.1	20	86	0	57	47	0	7	45	1.30
330359--330400	20	2.1	20	86	0	57	47	0	7	45	1.30
333080--333110	14	2.1	15	94	5	55	22	12	3	61	1.46
334409--334467	31	1.9	31	85	0	82	42	11	11	33	1.78
335564--335588	2	12.5	2	100	0	50	52	0	48	0	1.00
360424--360493	33	2.2	33	86	2	97	41	12	11	34	1.79
369870--369898	7	4.1	7	100	0	58	27	17	13	41	1.87
380829--380892	13	4.9	13	84	0	92	29	9	25	35	1.87
393599--393678	32	2.5	32	83	0	97	51	10	2	36	1.49
395905--396029	42	3.0	42	83	3	126	44	16	14	24	1.85
397364--397392	6	4.8	6	100	0	58	34	17	13	34	1.89
407370--407413	13	3.4	13	87	6	63	20	0	2	77	0.88
413342--413381	20	2.0	19	85	9	53	70	2	0	27	1.01
414413--414444	2	16.0	2	100	0	64	50	0	0	50	1.00
416490--416529	14	2.9	14	84	0	53	42	17	7	32	1.77
419242--419277	2	18.0	2	100	0	72	50	0	0	50	1.00
433818--433848	16	1.9	16	93	0	53	51	0	0	48	1.00
434691--434720	11	2.6	11	94	5	51	36	3	0	60	1.14
436939--437099	33	4.8	32	70	8	97	29	22	14	32	1.94
436919--437102	101	1.8	101	89	0	287	29	22	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445832--445880	17	2.8	17	78	6	53	51	4	2	42	1.32
448969--449201	103	2.3	102	82	3	290	29	22	16	31	1.96
452676--452709	17	2.0	17	94	0	59	79	0	5	14	0.91
469153--469203	24	2.0	26	85	7	70	35	1	1	60	1.19
469838--469862	6	4.2	6	100	0	50	20	48	0	32	1.50
482057--482086	15	2.0	15	93	0	51	10	20	3	66	1.35
494612--494645	8	4.2	8	100	0	68	38	14	0	47	1.45
494948--494975	2	14.0	2	100	0	56	50	0	0	50	1.00
495845--495922	40	1.9	42	84	10	108	58	1	1	38	1.14
501871--501951	22	4.0	21	85	9	96	32	0	12	55	1.37

Tables:   1   2