genome.fa.s4437.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold338
Parameters: 2 7 7 80 10 50 1000
Length:  543359

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300461--300542	28	2.6	32	83	11	91	47	18	2	31	1.61
310836--310911	34	2.2	34	95	0	134	35	7	10	46	1.68
322414--322444	14	2.2	14	94	0	53	25	12	25	35	1.92
327181--327225	24	2.0	21	87	12	63	51	0	2	46	1.13
342121--342214	25	3.8	24	70	6	62	36	21	20	22	1.95
344428--344537	41	2.7	41	91	0	184	22	24	20	32	1.97
344579--344629	19	2.6	20	73	14	52	33	19	0	47	1.50
350840--351132	146	2.0	147	99	0	579	50	6	3	39	1.45
358541--358580	16	2.5	15	92	8	62	32	7	12	47	1.69
359219--359248	15	2.0	15	100	0	60	26	13	20	40	1.89
360968--361090	61	2.0	61	90	0	192	34	23	14	26	1.94
361598--361693	51	2.0	49	86	10	135	29	4	13	53	1.58
363892--363975	43	2.0	43	90	4	134	21	17	25	35	1.95
364224--364268	23	2.0	21	84	16	56	35	20	11	33	1.88
370574--370628	21	2.6	22	80	11	62	9	23	1	65	1.31
373150--374453	561	2.3	561	94	0	2295	30	17	16	35	1.92
386539--386578	6	6.7	6	85	0	53	67	15	0	17	1.23
386539--386569	12	2.6	12	100	0	62	61	16	0	22	1.34
396847--396896	8	7.0	7	82	17	59	70	0	14	16	1.18
396846--396896	13	3.6	14	86	10	59	70	0	13	15	1.17
398130--398367	128	1.9	127	86	3	343	31	19	22	25	1.98
398336--399082	44	17.2	44	71	9	372	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398336--399095	217	3.5	217	94	0	1234	27	19	25	27	1.99
403505--403548	6	7.3	6	80	10	54	77	2	20	0	0.88
406341--406382	22	2.0	21	90	4	66	30	4	33	30	1.78
407914--408008	49	2.0	47	91	4	154	31	5	8	54	1.53
409005--409127	61	2.0	61	91	0	201	34	21	15	27	1.94
411842--411903	30	2.1	30	96	0	115	35	6	9	48	1.62
415260--415323	24	2.5	26	80	10	78	34	4	35	25	1.77
416808--416910	36	2.9	36	89	2	145	26	40	12	20	1.88
417222--417262	20	2.0	20	95	0	73	39	26	9	24	1.86
417399--417475	27	2.8	28	78	2	75	29	10	10	49	1.70
420151--420236	43	2.0	42	88	2	127	32	20	19	26	1.97
421424--421467	19	2.2	21	88	8	65	77	2	13	6	1.07
426912--427746	42	19.9	42	100	0	1670	33	16	9	40	1.81
431623--431647	12	2.1	12	100	0	50	32	8	16	44	1.76
431815--431846	16	2.0	16	100	0	64	68	6	0	25	1.12
432198--432277	39	2.0	40	97	2	153	41	18	25	15	1.89
432219--432281	20	3.2	20	62	20	51	44	19	23	12	1.85
451701--451746	12	3.8	12	85	2	56	63	2	21	13	1.40
458694--458743	21	2.4	21	93	0	82	8	22	0	70	1.13
478739--478765	14	1.9	14	100	0	54	29	14	22	33	1.94
485467--485531	20	3.3	19	73	16	51	38	16	21	23	1.93
486999--487038	18	2.2	18	86	4	53	12	27	0	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491863--492305	219	2.0	218	89	1	681	15	23	24	36	1.93
495307--495344	21	1.9	20	89	10	60	55	5	0	39	1.23
495949--496044	33	3.2	33	65	27	93	43	14	9	32	1.77
496653--496738	29	3.1	28	84	12	90	33	8	12	45	1.72
496666--496738	29	2.5	29	95	0	128	31	9	13	45	1.76
497831--497892	11	5.8	11	80	14	76	72	4	8	14	1.24
497834--497903	10	7.0	10	79	14	74	72	4	8	14	1.23
497832--497900	19	3.4	20	82	15	72	75	4	8	11	1.17
536676--536708	15	2.1	16	88	5	50	9	15	0	75	1.03
536675--536719	21	2.1	21	88	8	65	8	17	0	73	1.08
540313--540357	23	2.0	23	100	0	90	37	17	26	17	1.93
540809--540888	42	1.9	42	82	10	101	12	21	2	63	1.40
540851--540929	18	4.4	18	87	3	106	6	20	2	70	1.20
540851--540929	36	2.2	36	88	8	117	6	20	2	70	1.20
540836--540931	6	16.0	6	73	0	84	6	20	2	70	1.19

Tables:   1   2

The End!