Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold235
Parameters: 2 7 7 80 10 50 1000
Length:  1667838

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 518 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1587911--1588075
27
6.2
26
80
3
159
15
14
21
49
1.80
1587908--1588075
26
6.3
26
80
3
165
14
14
21
48
1.80
1587897--1588075
53
3.4
52
79
8
182
15
14
22
46
1.82
1593424--1593543
55
2.1
57
82
11
142
48
6
16
28
1.71
1594320--1594354
11
3.1
11
88
8
52
20
2
8
68
1.29
1599122--1599207
44
2.0
44
86
2
120
48
4
22
24
1.69
1602911--1603004
30
3.1
30
89
1
125
27
20
6
45
1.75
1602928--1603006
15
5.2
16
71
11
67
27
18
6
46
1.73
1604502--1604540
21
1.9
19
85
10
51
30
23
10
35
1.88
1608603--1608664
31
2.0
31
93
3
108
14
6
20
58
1.59
1612163--1612209
21
2.2
22
88
11
71
25
4
0
70
1.05
1614560--1614642
42
2.0
42
85
4
114
25
24
24
26
2.00
1614560--1614658
42
2.4
43
80
13
109
23
24
25
27
2.00
1615603--1615701
52
1.9
52
87
4
146
21
17
14
47
1.82
1615607--1615722
52
2.2
52
83
4
135
22
14
14
48
1.80
1619237--1619269
15
2.2
15
94
0
57
15
15
0
69
1.19
1624052--1624095
20
2.2
20
100
0
88
27
25
9
38
1.86
1628250--1628336
20
4.3
20
72
10
70
45
14
9
29
1.76
1638177--1638253
20
3.8
20
76
6
68
45
11
9
33
1.72
1638167--1638262
40
2.3
41
79
12
108
46
10
8
34
1.68
1643150--1643176
14
1.9
14
100
0
54
44
11
14
29
1.80
1643206--1643238
16
2.1
16
94
0
57
39
9
12
39
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1644006--1644186
28
6.3
28
71
12
134
31
14
27
26
1.95
1644064--1644216
28
5.2
29
69
21
113
30
13
30
26
1.94
1644032--1644365
59
5.7
59
84
1
368
33
12
26
27
1.93
1656020--1656063
18
2.4
19
79
20
58
43
0
13
43
1.44
1658921--1658962
21
2.0
21
86
4
59
35
0
0
64
0.94
1659623--1659664
19
2.2
19
91
0
66
57
2
11
28
1.47
1660334--1660714
191
2.0
191
100
0
762
45
11
13
29
1.78
1663203--1663251
25
1.9
26
87
4
73
46
0
4
48
1.20
1663230--1663283
20
2.7
21
86
13
78
31
0
11
57
1.34
1663225--1663283
19
3.1
19
85
11
68
33
0
10
55
1.33
1665366--1665451
17
4.6
18
69
16
50
33
1
1
63
1.09
1666441--1666517
40
2.0
40
94
2
138
41
20
16
20
1.90
1666942--1667103
86
1.9
84
94
2
288
17
16
31
34
1.92
1667716--1667788
21
3.4
21
74
12
69
5
1
47
45
1.34
1667718--1667785
14
4.8
14
78
7
57
4
1
51
42
1.31
1667746--1667802
29
2.0
29
82
6
71
12
0
43
43
1.41

Tables:   1   2   3   4   5

The End!