genome.fa.s508.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold235
Parameters: 2 7 7 80 10 50 1000
Length:  1667838

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 518 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427721--427763	17	2.6	16	82	10	50	51	9	4	34	1.55
428532--428563	16	2.0	16	100	0	64	43	12	6	37	1.68
430528--430620	44	2.1	44	91	0	150	43	11	20	24	1.85
430538--430634	44	2.2	44	86	0	131	42	12	24	20	1.87
430641--430877	50	4.8	50	84	2	302	26	20	33	19	1.97
433509--433572	32	2.0	32	100	0	128	50	12	3	34	1.56
437733--437799	33	2.0	35	82	8	86	47	2	1	47	1.26
438116--438151	18	2.0	18	100	0	72	22	16	27	33	1.95
441257--441436	51	3.6	50	75	8	177	28	27	18	25	1.98
464686--464756	9	8.5	8	77	22	67	25	4	0	70	1.05
464685--464750	13	4.9	13	80	17	73	25	4	0	69	1.07
464686--464756	4	17.0	4	76	23	67	25	4	0	70	1.05
468673--468867	51	3.8	51	76	6	189	32	26	15	25	1.95
472963--473056	47	2.0	47	100	0	188	44	23	12	19	1.85
473141--473196	19	2.8	19	89	5	85	41	10	12	35	1.78
473188--473232	21	2.0	23	83	8	58	37	4	13	44	1.64
473549--473604	15	3.6	15	75	13	51	28	1	1	67	1.10
473551--473604	24	2.2	24	83	6	65	27	1	1	68	1.10
473927--473957	6	5.0	6	92	7	53	16	0	0	83	0.64
473927--473957	13	2.5	13	94	5	55	16	0	0	83	0.64
478625--478678	24	2.2	24	87	9	74	74	0	7	18	1.05
478625--478678	5	11.0	5	76	4	56	74	0	7	18	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480151--480184	17	1.9	18	94	5	61	38	14	5	41	1.70
490003--490062	26	2.3	26	97	0	111	36	10	28	25	1.88
490793--490965	27	6.5	26	80	8	143	40	19	18	21	1.92
490793--490938	27	5.4	27	83	4	161	42	19	17	21	1.89
490793--490933	54	2.6	54	85	5	189	43	18	16	21	1.88
490843--491061	54	4.3	54	72	16	162	35	21	22	20	1.96
490981--491086	27	3.9	27	92	0	185	32	22	23	21	1.98
491105--491215	24	4.6	24	78	4	89	27	9	19	43	1.81
491161--491230	11	6.0	11	69	12	50	20	5	22	51	1.68
491156--491237	24	3.4	24	91	0	128	21	7	21	48	1.74
491353--491413	26	2.3	26	85	0	77	18	22	24	34	1.96
491427--491617	32	6.0	32	79	0	220	21	18	20	38	1.93
491416--491643	96	2.4	96	80	5	237	22	17	19	39	1.92
491428--491651	32	7.1	31	78	8	204	24	17	19	38	1.93
491440--491616	64	2.8	64	97	0	336	20	18	21	39	1.92
491635--491686	22	2.4	22	80	0	59	19	17	19	44	1.87
492249--492287	20	2.0	20	100	0	78	41	0	15	43	1.46
503235--503263	14	2.1	14	100	0	58	20	31	20	27	1.98
505514--505603	28	3.2	27	85	4	99	33	17	17	31	1.94
505706--505786	26	3.1	26	85	7	119	30	25	24	18	1.98
514534--514658	28	4.3	28	79	12	126	28	24	24	24	2.00
514772--514843	26	2.8	26	81	6	76	41	26	22	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514998--515381	27	14.3	27	85	3	472	17	22	18	41	1.91
514998--515381	53	7.2	54	88	2	472	17	22	18	41	1.91
522547--522596	25	2.0	26	92	4	84	38	22	26	14	1.91
522775--523347	27	21.3	27	79	4	512	18	17	21	42	1.89
553172--553202	16	1.9	16	93	0	53	80	6	9	3	0.99
553174--553212	20	2.0	20	84	0	51	76	5	15	2	1.06
554218--554274	25	2.3	25	87	6	80	22	17	24	35	1.95
558286--558319	15	2.3	15	94	0	59	14	11	35	38	1.83
568405--568760	27	13.3	27	84	3	441	16	19	20	44	1.87
568405--568760	81	4.4	80	87	3	502	16	19	20	44	1.87
578591--578649	23	2.5	23	83	8	66	25	1	1	71	1.05
578618--578649	4	8.0	4	92	0	55	28	0	0	71	0.86
579714--580003	154	1.9	152	88	4	379	35	8	5	50	1.56
579720--580003	152	1.9	152	90	5	457	34	8	5	51	1.57
580221--580254	15	2.3	15	94	0	59	17	0	17	64	1.29
593149--593317	88	2.0	85	84	3	221	28	19	25	26	1.99
593322--593429	50	2.2	50	82	0	126	27	19	25	27	1.99
603003--603059	25	2.3	25	87	6	80	22	17	24	35	1.95
612062--612282	27	8.3	27	83	7	272	17	20	18	42	1.89
612058--612272	53	4.0	53	89	1	304	17	20	19	43	1.89
619628--620252	27	23.3	27	81	6	617	17	18	19	43	1.88
622844--622868	7	3.6	7	100	0	50	88	0	12	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623056--623102	24	1.9	23	83	12	58	27	2	23	46	1.63
646586--646648	25	2.6	25	94	2	110	41	11	28	19	1.85
656304--656474	85	2.0	85	91	0	279	27	15	17	39	1.89
664219--664264	20	2.4	19	78	7	56	76	8	13	2	1.11
674555--674661	25	4.3	25	80	9	101	26	20	21	31	1.98
674604--674668	25	2.6	25	90	0	103	27	20	20	32	1.97
678086--678126	18	2.3	18	95	4	75	12	24	24	39	1.89
684947--684976	8	3.6	8	91	8	51	66	0	10	23	1.21
696597--696841	51	4.8	51	88	2	325	31	24	16	27	1.97
696594--696841	101	2.5	101	84	3	329	30	24	16	28	1.96
707420--707508	25	3.7	24	70	10	67	15	12	0	71	1.13
707731--707755	8	3.1	8	100	0	50	24	0	0	76	0.80
710160--710211	15	3.6	14	75	17	52	73	3	5	17	1.19
711753--711807	22	2.5	22	76	5	58	41	16	21	20	1.90
711824--712044	32	7.0	31	71	6	138	34	21	22	21	1.97
712044--712097	26	2.1	26	96	0	99	35	27	22	14	1.93
712228--712328	25	4.1	25	92	1	159	42	27	4	24	1.75
724515--724597	37	2.3	37	89	4	134	36	7	8	48	1.61
728420--728444	13	1.9	13	100	0	50	32	12	24	32	1.91
729493--729834	170	2.0	170	91	0	558	25	18	25	30	1.98
735893--735926	2	17.0	2	100	0	68	50	0	0	50	1.00
736063--736510	147	3.1	146	84	5	545	43	9	4	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737025--737058	2	17.0	2	100	0	68	50	0	0	50	1.00
737195--737642	147	3.1	146	84	5	545	43	9	4	42	1.58
743345--743376	12	2.7	12	95	0	55	59	25	0	15	1.36
745846--745943	49	2.0	49	100	0	196	32	24	6	36	1.80
746059--746091	16	2.1	16	100	0	66	33	24	0	42	1.55
746889--747639	376	2.0	376	92	1	1263	27	22	15	33	1.95
755450--755655	43	4.7	43	85	1	232	30	25	16	27	1.97
756059--756141	43	1.9	43	85	0	112	48	9	10	31	1.70
756128--756155	14	2.0	14	100	0	56	50	7	14	28	1.69
758081--758126	21	2.2	21	92	0	74	50	23	8	17	1.74
760879--761334	41	11.2	41	81	6	453	30	27	18	23	1.98
761388--761464	39	2.0	40	84	2	102	22	20	22	35	1.96
761375--761464	39	2.3	38	78	5	99	18	20	24	36	1.95
763482--763588	27	4.0	27	87	2	153	42	20	18	18	1.90
767112--767239	43	3.0	43	74	16	113	24	19	25	30	1.98
768335--768393	29	2.0	31	90	6	95	28	5	27	38	1.78
770861--770988	57	2.2	58	88	1	195	37	14	21	26	1.92
772759--772877	61	1.9	62	89	5	188	44	13	13	28	1.81
775879--775908	4	7.5	4	100	0	60	53	0	0	46	1.00
776506--776547	22	1.9	22	90	0	66	28	2	4	64	1.26
778313--778351	21	1.9	19	85	10	51	56	15	5	23	1.59
789318--789342	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792626--792652	13	2.1	13	100	0	54	22	22	0	55	1.44
797812--797863	20	2.6	20	90	0	86	44	17	11	26	1.83
808620--808653	12	2.8	12	95	0	59	67	5	8	17	1.37
808693--808725	13	2.4	14	85	10	50	54	3	18	24	1.57
814832--814890	23	2.5	23	74	17	59	32	20	8	38	1.83
814952--815326	29	12.9	29	77	8	228	24	26	12	36	1.91
814962--815036	30	2.5	30	89	2	107	24	30	9	36	1.87
815072--815325	58	4.4	58	82	6	300	24	26	12	36	1.92
815072--815325	87	2.9	87	83	5	300	24	26	12	36	1.92
816403--816545	71	2.0	72	98	1	279	28	23	12	34	1.92

Tables:   1   2   3   4   5