genome.fa.s575.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold347
Parameters: 2 7 7 80 10 50 1000
Length:  466911

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287413--287444	12	2.7	12	90	0	55	43	9	15	31	1.78
288679--288728	5	10.0	5	82	8	57	76	0	6	18	0.99
295525--295556	12	2.7	12	90	0	55	43	9	15	31	1.78
298255--298296	22	1.9	23	85	9	61	30	2	7	59	1.37
300447--300487	14	2.9	14	88	0	55	29	9	26	34	1.88
301438--301486	24	2.0	24	100	0	98	42	16	16	24	1.87
302768--302813	22	2.1	22	84	4	58	54	6	19	19	1.66
304379--304404	12	2.2	12	100	0	52	7	15	30	46	1.74
311254--311339	43	2.0	43	97	0	163	38	30	12	18	1.88
315794--315868	3	25.0	3	97	0	141	0	32	0	68	0.90
318413--318437	2	12.5	2	100	0	50	52	0	0	48	1.00
320203--320289	43	2.0	43	82	4	104	28	13	19	37	1.90
325929--325958	14	2.1	14	100	0	60	40	20	0	40	1.52
336396--336430	3	11.7	3	93	0	61	0	37	0	62	0.95
341031--341083	19	2.6	22	80	14	60	58	0	0	41	0.98
341034--341106	31	2.3	32	83	6	87	54	1	0	43	1.08
341600--341819	108	2.0	108	99	0	431	27	30	15	27	1.96
355856--355889	18	1.9	18	88	5	52	61	0	0	38	0.96
355844--355898	19	3.0	18	76	12	67	56	0	0	43	0.99
368015--368054	20	2.0	20	90	0	62	32	25	5	37	1.77
368474--368512	20	2.0	20	85	10	53	43	2	0	53	1.14
368490--368866	188	2.0	189	99	0	747	53	7	6	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369473--369808	114	3.0	113	90	1	521	32	14	15	37	1.88
370729--370770	18	2.3	19	87	4	59	59	2	4	33	1.31
370767--370819	20	2.6	20	78	3	61	69	5	1	22	1.19
370776--370839	29	2.2	29	78	10	69	70	6	0	23	1.10
372202--372244	3	14.3	3	100	0	86	32	0	0	67	0.91
372309--372342	15	2.3	15	100	0	68	41	0	0	58	0.98
372925--373116	62	3.1	62	96	1	350	25	17	19	38	1.93
373670--373720	19	2.8	17	75	19	50	27	1	3	66	1.20
375497--375535	15	2.6	15	88	8	53	38	0	5	56	1.22
375750--375796	21	2.3	21	88	3	78	25	8	0	65	1.20
375880--375943	31	2.1	31	90	0	101	39	7	21	31	1.82
378594--378639	19	2.3	21	82	10	53	30	0	6	63	1.20
395375--395417	18	2.4	18	88	7	61	46	0	0	53	1.00
401152--401197	24	2.0	23	86	4	65	23	0	26	50	1.50
401224--401297	29	2.6	29	82	4	96	48	6	9	35	1.62
404052--404089	19	2.0	20	84	5	51	26	13	18	42	1.87
412061--412102	20	2.0	21	90	4	68	21	16	28	33	1.95
413073--413175	31	3.3	31	69	17	88	52	0	2	43	1.22
423793--423953	33	4.9	32	72	11	83	26	26	17	29	1.97
423729--423952	99	2.3	99	92	0	367	25	26	16	30	1.97
438430--438505	21	3.7	21	85	7	111	36	11	9	42	1.74
438443--438506	19	3.3	19	93	4	101	37	14	9	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439086--439435	125	2.7	127	85	7	472	24	23	20	31	1.98
440679--440729	10	4.8	11	85	9	63	0	17	0	82	0.67
440680--440724	15	2.9	15	93	3	72	0	20	0	80	0.72
440679--440730	6	9.7	6	78	17	53	0	17	0	82	0.66
445814--445868	19	2.7	21	83	11	87	36	10	10	41	1.75
446488--447072	296	2.0	288	92	2	963	35	14	13	36	1.85
447128--447168	16	2.2	20	80	20	54	63	0	9	26	1.25
447994--448048	18	3.1	17	92	5	83	0	69	1	29	0.99
447994--448048	6	9.2	6	78	7	58	0	69	1	29	0.99
460275--460329	21	2.7	21	77	8	60	50	3	0	45	1.19
464115--464367	125	2.0	125	91	0	407	35	16	18	29	1.93

Tables:   1   2

The End!