Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold309
Parameters: 2 7 7 80 10 50 1000
Length:  1359455

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 517 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1288493--1288531
20
2.0
20
90
10
62
15
23
5
56
1.59
1288796--1288975
50
3.5
50
81
5
162
23
28
21
26
1.99
1290951--1290985
13
2.9
12
88
12
54
42
17
14
25
1.86
1291057--1291106
25
2.1
24
85
10
68
30
10
20
40
1.85
1292785--1292824
19
2.1
19
86
9
55
47
12
5
35
1.63
1293407--1293462
27
2.1
27
93
0
94
33
25
23
17
1.96
1295394--1295602
27
7.8
27
78
7
122
29
8
20
41
1.82
1295397--1295603
54
3.9
54
76
7
179
28
8
21
41
1.82
1295397--1295548
53
2.8
53
82
7
164
26
9
22
41
1.85
1295533--1295617
27
3.2
27
93
1
136
35
5
15
43
1.71
1298649--1298694
22
2.1
22
100
0
92
30
30
4
34
1.77
1299870--1299925
27
2.1
27
90
6
87
33
23
23
19
1.97
1300412--1300599
81
2.3
81
81
3
218
31
9
20
38
1.85
1300390--1300607
27
8.1
27
76
4
179
32
11
19
37
1.87
1311988--1312041
22
2.5
22
93
0
90
11
20
27
40
1.86
1314067--1314470
41
9.9
41
84
3
438
21
21
28
27
1.99
1314539--1314741
21
9.6
21
65
17
64
21
0
33
43
1.57
1314583--1314636
22
2.5
21
78
3
54
22
0
31
46
1.52
1314599--1314643
7
6.3
7
86
2
54
20
0
28
51
1.48
1314604--1314742
7
19.9
7
74
16
56
19
0
37
43
1.51
1316866--1316968
29
3.5
29
67
19
77
12
14
6
66
1.44
1319475--1319518
22
1.9
22
86
9
61
59
4
0
36
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1319537--1319733
43
4.6
43
86
1
236
23
16
25
34
1.95
1321891--1321927
2
18.5
2
100
0
74
0
0
48
51
1.00
1323202--1323285
3
28.7
3
84
4
100
61
4
1
32
1.24
1328146--1328210
13
5.1
13
78
10
80
36
29
6
27
1.81
1328146--1328210
25
2.5
26
83
11
98
36
29
6
27
1.81
1332646--1332686
21
1.9
21
85
5
55
58
2
0
39
1.11
1332649--1332701
26
2.0
27
88
7
81
64
1
0
33
1.05
1346454--1346598
50
2.9
49
72
8
139
30
22
22
25
1.99
1346460--1346645
100
1.9
100
81
0
228
30
22
21
25
1.99
1346293--1346862
267
2.1
267
88
0
827
27
20
25
27
1.99
1346885--1347214
126
2.6
127
87
4
477
31
20
21
26
1.98
1348501--1348541
15
2.7
15
88
0
55
36
0
0
63
0.95
1348625--1348665
21
2.0
21
85
0
55
31
4
4
58
1.40
1348822--1348869
16
3.0
16
81
0
51
37
6
6
50
1.53
1356353--1356439
45
2.0
43
81
4
102
18
14
14
51
1.76

Tables:   1   2   3   4   5

The End!