genome.fa.s791.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold399
Parameters: 2 7 7 80 10 50 1000
Length:  323073

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235358--235482	27	4.6	27	92	0	205	33	19	21	25	1.97
235358--235484	54	2.4	54	94	0	227	33	19	22	25	1.97
235546--235604	24	2.5	24	86	5	84	20	8	23	47	1.77
235669--235732	27	2.4	27	85	12	80	20	25	23	31	1.98
235686--235738	27	2.0	27	81	7	63	22	26	20	30	1.98
235720--235773	26	2.1	26	92	0	90	16	22	25	35	1.95
235730--235785	26	2.2	26	86	0	76	12	23	32	32	1.92
235776--236021	32	7.7	31	80	6	201	18	21	23	36	1.95
235773--236021	64	3.9	64	76	10	249	18	22	23	36	1.95
235808--236027	96	2.3	95	86	0	305	18	22	22	35	1.95
255409--255484	38	2.0	38	87	2	109	34	18	21	26	1.96
255261--255736	44	11.0	44	85	4	610	30	17	26	25	1.97
255681--255776	44	2.2	44	81	3	104	32	15	27	25	1.96
259794--259879	42	2.0	42	100	0	172	45	12	4	37	1.63
262001--262282	27	10.4	26	83	5	330	18	17	21	42	1.89
262002--262282	54	5.2	54	88	0	400	18	17	20	43	1.89
262001--262282	81	3.5	80	87	5	406	18	17	21	42	1.89
263398--263444	24	1.9	24	91	4	76	25	40	0	34	1.56
303804--304136	27	12.6	27	80	8	346	18	16	21	43	1.88
303895--303933	20	2.0	20	95	5	71	20	15	25	38	1.92
303925--304137	55	3.9	55	86	1	302	19	17	19	44	1.87
303932--304137	82	2.5	82	86	3	306	18	17	19	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304683--304859	23	7.5	23	75	8	160	42	17	13	25	1.86
304626--304859	72	3.3	70	86	3	299	42	18	11	26	1.85
310294--310337	22	1.9	24	90	9	74	25	20	0	54	1.45
316035--316092	30	2.0	29	86	6	82	27	3	1	67	1.17
316046--316102	23	2.6	22	81	15	73	31	1	1	64	1.13
316053--316113	31	2.0	30	83	3	77	34	3	1	60	1.23
318041--318253	107	2.0	108	93	0	365	44	9	10	35	1.72
318358--318420	33	1.9	33	93	0	108	63	11	1	23	1.36
319827--319884	30	1.9	31	85	3	82	48	5	20	25	1.70

Tables:   1   2

The End!