genome.fa.s14.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_14 ID=scaffold_14-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  2042280

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 804 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193257--193315	29	2.0	29	90	0	91	38	35	5	20	1.75
194692--194730	19	2.0	20	90	5	62	53	5	2	38	1.37
203000--203038	11	3.4	11	80	13	51	51	0	2	46	1.14
203018--203054	14	2.4	17	86	13	53	45	0	0	54	1.00
211812--211879	33	2.0	35	86	11	97	20	0	13	66	1.25
211812--211877	15	4.7	14	80	17	75	21	0	13	65	1.27
211839--211895	24	2.4	23	82	2	78	19	0	8	71	1.11
213113--213167	28	2.0	28	96	0	101	43	5	7	43	1.55
213550--213578	12	2.3	13	94	5	51	20	6	6	65	1.40
232134--232249	61	1.9	58	86	5	160	50	4	4	40	1.42
241848--241914	33	2.0	33	94	0	116	22	22	19	35	1.96
242558--242599	9	4.8	9	79	5	50	11	7	0	80	0.88
250899--251011	27	4.2	27	83	3	75	19	17	23	39	1.92
250916--251142	27	8.5	27	84	3	253	18	18	20	42	1.89
250919--251137	80	2.7	81	82	3	282	18	18	20	42	1.89
250916--251137	53	4.2	53	82	2	257	18	18	20	43	1.89
251422--252071	27	23.7	27	80	4	550	18	18	21	41	1.90
251422--252071	54	11.9	54	80	4	631	18	18	21	41	1.90
251424--252071	81	7.9	80	80	5	614	18	18	21	41	1.91
251574--251703	66	2.0	65	83	4	163	19	16	19	45	1.86
251552--251722	92	1.8	92	84	1	234	18	17	21	42	1.89
251552--251730	93	1.9	92	83	1	232	17	17	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251524--251890	119	3.0	119	78	12	344	17	19	22	40	1.91
251639--252071	107	4.0	107	82	5	444	18	18	21	41	1.91
252075--252363	146	2.0	146	93	0	488	27	24	22	25	2.00
256710--256906	50	3.8	51	80	6	202	28	21	27	22	1.99
258575--258868	27	10.9	27	85	3	333	18	18	20	41	1.90
258575--258868	81	3.6	81	84	3	367	18	18	20	41	1.90
265182--265219	19	2.1	19	90	5	60	60	18	5	15	1.53
278862--278928	34	2.0	34	97	2	127	29	25	0	44	1.54
281415--281559	50	2.9	50	80	3	166	29	28	18	23	1.98
284132--284159	8	3.5	8	100	0	56	75	0	0	25	0.81
292175--292244	34	2.1	34	97	0	131	32	24	21	21	1.98
295536--295577	22	1.9	22	95	0	75	69	0	7	23	1.13
296913--296949	19	1.9	18	89	10	56	2	18	0	78	0.87
310604--310629	12	2.2	12	100	0	52	34	7	15	42	1.75
310616--310663	19	2.4	20	93	6	80	37	10	14	37	1.81
310621--310686	19	3.0	22	82	12	66	37	7	16	37	1.77
311102--311146	2	22.5	2	100	0	90	48	0	0	51	1.00
311134--311239	33	3.4	32	71	19	98	33	12	1	51	1.50
311168--311211	17	2.6	17	85	3	63	40	11	0	47	1.39
316366--316655	44	6.5	44	75	5	228	28	16	24	30	1.97
316365--316655	132	2.2	133	89	0	449	28	16	24	30	1.97
316635--316964	88	3.8	88	90	1	500	27	30	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316635--316964	176	1.9	176	92	0	552	27	30	23	19	1.98
316952--317161	44	4.8	44	83	6	266	26	17	26	29	1.97
317945--317970	12	2.2	12	100	0	52	34	7	15	42	1.75
317957--318004	19	2.4	20	93	6	80	37	10	14	37	1.81
317962--318027	19	3.0	22	82	12	66	37	7	16	37	1.77
318329--318375	3	15.0	3	86	8	67	34	2	2	61	1.20
318461--318491	2	15.5	2	100	0	62	48	0	0	51	1.00
318513--318556	17	2.6	17	85	3	63	40	11	0	47	1.39
318580--318606	2	13.5	2	100	0	54	51	0	0	48	1.00
318676--318704	2	14.5	2	100	0	58	48	0	0	51	1.00
318956--319007	4	12.5	4	80	8	59	21	0	3	75	0.97
318956--319007	25	2.1	25	85	7	70	21	0	3	75	0.97
324297--324327	15	2.1	15	93	0	53	25	29	6	38	1.81
327557--327607	24	2.1	24	88	0	75	43	19	17	19	1.89
339227--339360	50	2.7	50	94	0	241	24	14	23	38	1.92
341384--341602	27	8.1	27	87	1	296	42	24	15	17	1.88
342771--342796	12	2.2	12	100	0	52	30	7	0	61	1.24
342781--342825	18	2.5	18	88	0	63	24	13	4	57	1.54
346032--346127	27	3.6	27	78	4	88	38	36	16	8	1.79
346188--346311	51	2.4	51	91	0	212	32	36	9	21	1.86
349125--349160	13	2.8	13	95	0	63	33	11	13	41	1.80
349125--349175	26	2.0	26	84	0	66	33	9	19	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354107--354145	18	2.2	17	86	13	53	33	0	20	46	1.51
354371--354515	23	6.3	23	92	0	236	20	20	28	31	1.97
359153--359197	23	2.0	23	82	8	56	42	11	0	46	1.39
361896--361946	20	2.6	20	78	3	59	56	1	0	41	1.10
368398--368450	27	2.0	27	100	0	106	37	20	11	30	1.88
370179--370209	10	3.1	10	95	0	53	25	0	32	41	1.56
371397--371436	2	20.0	2	100	0	80	50	0	0	50	1.00
371692--371805	19	5.7	21	86	5	82	38	15	7	37	1.77
371695--371739	22	2.0	22	86	4	63	35	17	6	40	1.76
371718--371809	19	4.8	19	91	0	157	38	15	8	38	1.78
371711--371809	38	2.7	38	93	3	175	37	16	8	38	1.78
372356--372829	44	10.9	45	71	15	261	26	22	21	29	1.99
372417--372842	217	2.0	218	90	2	687	27	22	20	29	1.99
373020--373137	50	2.4	50	82	0	146	25	23	25	25	2.00
373188--373483	44	6.7	44	87	3	391	31	25	16	26	1.96
374725--374772	18	2.7	18	87	6	53	0	22	0	77	0.78
374736--374780	6	7.3	6	82	12	56	0	20	0	80	0.72
374725--374779	24	2.3	23	81	9	65	0	23	0	76	0.79
374736--374782	24	1.9	25	91	4	78	0	21	0	78	0.75
379969--380045	19	3.7	21	76	13	68	40	16	5	37	1.71
379969--380026	22	2.6	22	81	7	64	41	17	5	36	1.72
380005--380058	19	2.8	19	88	0	90	35	16	9	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380621--380653	16	2.1	16	100	0	66	18	0	12	69	1.18
380679--380783	51	2.1	50	87	7	151	20	14	9	55	1.67
380731--380771	20	2.0	20	90	0	64	21	7	4	65	1.37
380814--380844	13	2.3	14	94	5	55	19	0	12	67	1.22
380829--380894	19	3.4	19	85	4	87	21	6	6	66	1.35
380810--380894	39	2.2	38	85	8	109	21	4	7	67	1.34
381074--381120	18	2.6	18	100	0	94	57	6	4	31	1.43
381074--381132	18	3.3	18	88	6	59	59	8	3	28	1.43
381123--381268	66	2.1	73	86	11	207	44	8	6	41	1.59
381257--381298	16	2.6	16	92	0	66	42	7	2	47	1.43
385520--385768	125	2.0	125	93	0	426	29	16	22	30	1.96
388825--389024	105	1.9	105	93	2	348	48	11	3	37	1.56
390439--390535	51	1.9	51	87	4	142	46	2	25	25	1.64
393426--393477	10	5.3	10	77	11	54	25	1	3	69	1.16
404983--405025	22	2.0	22	90	9	70	44	13	4	37	1.65
406653--406707	21	2.6	21	70	0	56	30	32	21	14	1.93
408897--408926	15	1.9	16	93	6	53	80	0	0	20	0.72
411709--411806	39	2.5	39	93	0	160	45	17	4	32	1.67
413905--413976	30	2.4	30	84	9	85	30	22	22	25	1.99
415305--416364	525	2.0	525	94	1	1838	28	20	15	35	1.93
422966--423206	50	4.7	51	78	4	184	28	20	27	23	1.99
423407--423446	20	2.0	20	90	9	64	55	5	22	17	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424618--424642	13	1.9	13	100	0	50	16	40	32	12	1.84
426853--427263	205	2.0	205	94	0	714	36	18	18	26	1.94
431763--431803	20	2.0	20	100	0	82	26	4	24	43	1.74
434339--434379	21	2.0	21	85	9	57	58	0	41	0	0.98
436287--436317	15	2.0	16	93	6	55	29	32	0	38	1.57
444268--444327	26	2.3	26	97	2	111	41	31	6	20	1.78
446098--446141	21	2.1	21	100	0	88	25	9	13	52	1.70
449852--449917	21	3.1	21	97	0	123	34	21	18	25	1.96
457827--457903	39	2.0	39	100	0	154	38	7	12	40	1.73
465360--465389	15	2.0	15	100	0	60	20	26	6	46	1.75

Tables:   1   2   3   4   5   6   7