genome.fa.s14.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_14 ID=scaffold_14-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  2042280

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 804 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758876--1759061	38	4.8	39	68	20	111	44	2	5	47	1.37
1759234--1759331	45	2.2	45	87	5	137	33	29	5	31	1.79
1759316--1759363	16	3.0	16	87	0	69	27	35	2	35	1.69
1759764--1759793	12	2.5	12	94	0	51	10	26	36	26	1.88
1760969--1761087	50	2.4	49	84	1	148	29	16	24	29	1.97
1761016--1761087	24	2.9	24	82	12	92	34	16	22	26	1.95
1760994--1761067	25	3.0	24	79	13	87	31	14	24	29	1.95
1762833--1762879	24	1.9	24	86	4	67	34	2	38	25	1.68
1763609--1763857	27	9.3	26	84	6	275	42	18	16	21	1.89
1763609--1763857	54	4.6	54	83	4	306	42	18	16	21	1.89
1764087--1764148	26	2.4	27	75	8	74	19	19	27	33	1.96
1764247--1764419	28	6.2	29	86	4	232	24	22	23	30	1.99
1769655--1769799	50	2.9	50	87	0	209	26	22	30	21	1.99
1770053--1770094	16	2.6	16	84	0	57	52	7	26	14	1.67
1771895--1771972	32	2.6	29	79	15	86	38	17	5	38	1.72
1776614--1776843	50	4.5	51	81	1	257	26	20	31	21	1.98
1776614--1776843	101	2.3	101	89	0	361	26	20	31	21	1.98
1783788--1783845	30	1.9	30	82	6	73	43	8	20	27	1.81
1784720--1784753	8	4.0	8	85	14	50	35	5	0	58	1.22
1784703--1784761	31	1.9	31	82	6	75	35	8	0	55	1.30
1802734--1802771	20	1.9	20	84	10	51	57	2	18	21	1.52
1806124--1806156	14	2.4	14	90	10	50	45	48	0	6	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810409--1810441	17	1.9	17	93	0	57	27	18	18	36	1.94
1823937--1824073	49	2.8	50	80	8	156	28	21	24	25	1.99
1825821--1825853	16	2.1	15	94	5	57	39	6	6	48	1.53
1828247--1828286	21	1.9	21	85	10	55	37	2	5	55	1.35
1836834--1837001	62	2.7	61	83	5	203	23	23	29	23	1.99
1839059--1839124	26	2.5	26	77	2	69	36	15	24	24	1.93
1839293--1839370	27	2.9	27	84	0	75	17	19	21	41	1.91
1839307--1839450	27	5.3	27	80	5	148	15	24	19	40	1.90
1839320--1839450	54	2.4	54	83	2	174	14	24	20	40	1.90
1861105--1861150	23	2.0	23	86	0	65	26	4	19	50	1.66
1864220--1864270	25	2.0	25	85	7	68	29	11	7	50	1.67
1864412--1864537	25	5.1	25	67	16	82	29	20	24	25	1.99
1871939--1872023	25	3.4	26	71	20	83	32	21	21	24	1.97
1888500--1888542	22	2.0	21	90	4	68	44	53	0	2	1.13
1888687--1888953	32	8.4	32	77	2	202	37	22	19	20	1.94
1888698--1888950	96	2.6	96	78	3	278	37	22	19	20	1.95
1888955--1889026	26	2.8	26	95	0	126	37	26	19	16	1.93
1889254--1889368	27	4.3	27	86	2	153	24	21	18	35	1.95
1889254--1889368	54	2.2	53	88	3	169	24	21	18	35	1.95
1892659--1892704	23	2.0	23	100	0	92	47	4	8	39	1.54
1898409--1898460	17	3.0	17	94	2	86	13	25	38	23	1.91
1898752--1898814	27	2.3	27	88	0	99	42	14	20	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1902319--1902587	27	10.0	26	81	7	227	42	18	16	21	1.89
1902318--1902558	81	3.0	80	80	6	254	43	19	16	20	1.87
1902984--1903116	28	4.8	28	84	1	169	21	24	23	30	1.99
1902973--1903124	56	2.7	56	83	5	182	23	25	21	30	1.99
1903100--1903178	33	2.4	33	86	0	104	30	30	21	17	1.96
1903101--1903189	33	2.7	34	84	5	92	30	29	20	20	1.97
1904608--1904656	20	2.5	20	100	0	98	53	0	46	0	1.00
1911049--1911138	25	3.6	25	84	1	117	42	25	18	13	1.87
1911314--1911605	27	10.9	27	83	4	304	18	18	20	42	1.89
1911326--1911605	81	3.5	81	84	3	341	17	18	20	43	1.88
1915096--1915205	45	2.4	45	80	5	125	44	37	2	15	1.61
1915096--1915211	23	5.2	22	75	5	99	43	37	2	16	1.62
1919394--1919593	23	8.7	21	70	16	121	42	34	4	19	1.70
1920054--1920098	20	2.2	21	88	4	65	57	17	0	24	1.40
1920052--1920100	21	2.3	22	82	10	66	57	18	0	24	1.41
1928897--1928960	27	2.4	27	91	0	101	32	15	23	28	1.95
1929040--1929173	24	5.6	24	84	5	132	24	6	23	44	1.77
1929275--1929327	26	2.0	26	96	0	97	16	18	24	39	1.91
1929342--1929436	32	3.0	32	81	6	120	24	22	17	35	1.95
1938379--1938416	17	2.2	18	86	13	53	50	0	7	42	1.31
1948453--1948531	21	3.6	21	66	21	54	39	12	0	48	1.41
1948460--1948535	27	3.1	27	58	31	62	38	13	0	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1948449--1948538	45	2.0	45	100	0	180	37	13	0	48	1.42
1950490--1950536	23	2.0	23	100	0	94	38	4	25	31	1.75
1968073--1968115	21	2.0	21	95	0	77	46	2	11	39	1.53
1976403--1976435	9	3.9	9	88	11	52	42	0	0	57	0.98
1976786--1976832	23	2.0	23	100	0	94	38	4	25	31	1.75
1982141--1982204	27	2.4	27	91	0	101	34	17	21	26	1.95
1982284--1982417	24	5.6	24	82	5	123	25	6	23	44	1.78
1982523--1982579	26	2.2	26	100	0	114	14	19	26	40	1.89
1982586--1982711	32	4.0	32	82	6	157	21	22	19	37	1.94
1982586--1982707	63	1.9	63	85	3	165	21	22	19	36	1.95
1988459--1988499	17	2.3	18	83	4	57	56	0	2	41	1.13
1993804--1993846	21	2.0	21	95	0	77	46	0	11	41	1.40
2006509--2006598	37	2.4	38	75	12	89	44	1	6	47	1.36
2010975--2011019	21	2.2	21	92	4	74	46	2	11	40	1.52
2012985--2013018	9	4.0	9	88	11	54	44	0	0	55	0.99
2035827--2035869	21	2.0	21	95	0	77	46	0	11	41	1.40
2038060--2038092	9	3.9	9	88	11	52	42	0	0	57	0.98
2040803--2040833	14	2.1	15	94	5	55	19	0	45	35	1.51

Tables:   1   2   3   4   5   6   7

The End!