Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397353.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_640.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42865

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6256--7851
171
9.4
171
74
5
1176
34
13
11
36
1.80
6551--6879
169
2.0
161
83
6
337
34
13
9
39
1.77
20198--20244
22
2.1
22
100
0
94
44
0
4
51
1.21
20334--20988
340
2.0
323
80
3
577
34
14
12
34
1.83
20329--21203
171
5.1
169
73
3
479
34
14
11
35
1.82
21309--21722
171
2.4
171
77
5
458
35
12
14
34
1.85
22313--23334
171
6.0
161
71
13
579
36
11
13
35
1.82
22672--23336
343
2.0
333
82
6
811
36
11
13
35
1.82
26256--28063
171
10.6
170
78
3
1670
35
15
11
36
1.83
26275--28063
681
2.6
674
80
5
1869
35
15
11
36
1.83
26256--27919
852
2.0
851
85
2
2304
36
15
11
36
1.84
28508--29267
171
4.5
170
76
6
547
33
11
13
38
1.81
30397--31616
171
7.1
169
77
6
1054
35
11
14
37
1.83
30397--31616
342
3.6
336
79
7
1223
35
11
14
37
1.83
31101--31599
169
3.0
159
78
10
315
35
11
15
37
1.84
39418--41830
171
14.1
171
79
2
2254
36
11
14
35
1.82
39418--42865
512
6.8
512
74
6
2261
36
11
13
35
1.82
39422--42858
854
4.1
847
73
7
2404
36
11
13
35
1.82
41851--42620
170
4.5
169
75
8
655
40
12
11
34
1.79
41840--42620
341
2.3
340
77
4
822
40
12
11
34
1.80
41851--42758
171
5.3
170
76
5
596
39
11
12
34
1.79
41851--42865
171
5.9
170
72
8
535
38
11
12
34
1.79

Tables:   1

The End!