genome.fa.s1006.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1562.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28824

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109--564	171	2.7	171	76	10	414	35	13	10	39	1.78
1424--2520	170	6.4	172	75	5	698	34	13	11	36	1.81
1332--2520	169	7.0	172	75	5	798	34	13	11	35	1.81
6070--7355	685	1.9	670	81	3	1441	34	12	11	36	1.79
9740--10971	172	7.1	172	75	5	861	34	11	12	36	1.80
9740--10974	519	2.4	518	82	1	1454	34	11	12	36	1.80
11457--12884	171	8.4	171	78	4	1248	37	11	14	36	1.83
11457--12838	341	4.1	340	78	6	1238	37	11	14	36	1.83
11457--12768	512	2.6	504	78	9	1364	37	11	14	36	1.83
12602--12932	164	2.0	163	80	5	373	37	11	14	37	1.81
13980--14373	171	2.3	171	82	4	456	39	11	10	38	1.76
15290--16881	171	9.3	172	77	7	1384	36	13	11	38	1.81
14569--16856	343	6.7	341	77	5	1766	35	13	10	37	1.80
14568--16706	678	3.1	681	76	5	1648	35	13	10	37	1.80
15295--16648	507	2.7	507	79	5	1281	37	13	10	38	1.80
16153--16881	173	4.2	173	81	4	762	35	14	12	35	1.85
17756--18171	171	2.4	171	86	1	566	33	15	13	37	1.86
17756--18273	171	3.0	169	82	4	542	34	14	13	35	1.86
18592--19337	172	4.3	171	74	2	496	36	12	12	36	1.81
18592--19440	172	4.9	171	74	3	456	34	13	12	36	1.81
19541--20253	171	4.2	170	78	4	628	39	12	12	34	1.80
20752--20976	117	2.0	107	78	10	227	34	15	11	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22537--24184	171	9.7	170	82	4	1809	37	12	13	36	1.82
22539--24181	512	3.2	510	83	4	1922	37	12	13	36	1.82
24742--25924	171	6.9	170	81	4	1206	35	14	12	37	1.84
24810--25924	341	3.3	336	82	5	1307	35	15	12	37	1.84
27524--27932	171	2.4	171	79	8	433	35	15	10	38	1.82

Tables:   1

The End!