genome.fa.s1008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398261.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1564.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18910

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--4024	171	23.6	169	77	4	3015	35	13	13	38	1.84
1--4024	510	7.9	511	77	5	3113	35	13	13	38	1.84
1--4024	681	5.9	677	77	5	3369	35	13	13	38	1.84
5144--6509	171	8.0	171	75	6	1029	34	13	13	38	1.83
5144--6509	170	8.0	171	75	6	1005	34	13	13	38	1.83
5144--6509	341	4.0	336	78	5	1116	34	13	13	38	1.83
7631--11434	171	22.3	170	76	6	2713	34	13	13	37	1.85
7631--14426	342	19.7	341	71	8	3760	34	13	13	37	1.84
11559--14426	171	16.7	171	74	8	1898	34	14	13	37	1.86
11797--14426	513	5.1	511	78	6	2327	34	14	13	37	1.86
14555--18909	171	25.4	170	76	5	3180	37	13	13	35	1.84
16858--16895	19	2.0	19	89	0	58	26	15	26	31	1.96
16707--17060	190	1.9	190	82	9	454	36	14	12	36	1.84
14535--18909	513	8.5	512	77	6	3612	37	13	13	35	1.84

Tables:   1

The End!