genome.fa.s101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397354.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_656.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42756

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700--1855	170	6.9	169	70	9	603	35	12	13	34	1.83
696--1339	341	1.9	331	80	5	674	35	13	13	34	1.84
1545--1854	172	1.8	172	81	4	392	36	11	15	36	1.84
2125--2415	157	1.9	155	81	5	352	39	11	11	38	1.77
2896--3215	170	1.9	161	81	4	306	35	12	14	34	1.85
3183--6980	171	22.2	170	72	8	1097	36	12	13	34	1.81
3408--4050	345	1.9	331	88	1	883	36	12	14	34	1.84
3419--4244	341	2.4	342	83	2	944	37	12	13	35	1.83
4389--6970	171	15.2	169	76	7	1445	37	12	13	35	1.83
4391--6990	342	7.6	338	75	8	1972	37	12	13	35	1.83
5229--6900	669	2.5	670	81	6	1837	38	12	14	35	1.83
4561--6987	840	2.9	844	77	7	2127	37	12	13	35	1.83
7857--8256	171	2.3	171	76	4	414	37	12	14	33	1.83
9661--16770	171	41.8	169	75	7	4311	37	12	14	34	1.83
11672--11970	154	1.9	158	82	2	381	38	13	13	34	1.84
16779--17591	1	813.0	1	91	0	1275	0	1	2	95	0.35
17588--23459	171	34.5	169	74	7	3529	37	11	13	34	1.82
17588--23459	343	17.2	340	75	7	3817	37	11	13	34	1.82
17635--23011	514	10.5	509	77	7	4058	37	11	13	34	1.82
24213--24941	171	4.3	173	72	8	438	37	11	13	34	1.81
24292--24941	342	1.9	333	80	5	670	36	11	14	34	1.83
34766--35043	35	7.9	35	81	3	272	34	7	12	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34766--35020	71	3.6	70	83	3	305	33	7	12	46	1.69
34730--35032	107	2.9	105	82	4	371	34	7	12	45	1.70
35889--35967	32	2.3	32	82	8	95	48	12	5	34	1.63
37286--38713	171	8.3	171	78	6	1202	38	12	13	35	1.83
37286--38714	353	4.2	340	78	7	1261	38	12	13	35	1.83
38169--38532	182	2.0	181	82	3	444	38	11	13	36	1.81
40206--42058	171	10.9	171	77	8	1572	38	12	13	35	1.83

Tables:   1

The End!