genome.fa.s102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397355.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1709.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41815

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984--3290	171	13.4	171	75	6	1682	36	14	11	37	1.81
984--3111	343	6.2	342	74	8	930	36	14	11	37	1.81
987--2738	514	3.4	514	80	4	1541	37	13	11	37	1.81
987--3278	516	4.4	507	77	6	1771	36	14	11	38	1.81
3998--4650	172	3.8	170	79	5	611	39	10	13	37	1.79
3998--4830	171	4.9	171	76	5	637	38	11	13	35	1.81
5440--5804	170	2.1	172	81	8	424	38	12	14	34	1.84
6256--7906	171	9.7	168	71	9	891	36	11	14	35	1.83
6797--7609	343	2.4	342	80	5	838	37	11	14	36	1.82
8144--9167	171	5.9	170	76	6	807	38	11	14	35	1.82
9459--9920	172	2.7	169	80	4	423	38	14	13	33	1.84
13411--13747	171	2.0	172	83	0	424	38	11	14	35	1.82
14125--14443	171	1.9	162	82	4	313	38	12	11	33	1.80
16327--17390	171	6.2	172	78	6	835	37	13	14	35	1.85
21584--21975	173	2.3	173	79	4	407	36	14	14	33	1.87
23884--24766	171	5.2	168	72	9	525	36	12	13	37	1.83
27163--29544	172	13.9	171	76	5	1846	35	13	12	37	1.83
27163--29300	512	4.2	511	78	7	1613	36	13	12	37	1.83
27163--29544	343	7.0	343	77	7	1786	35	13	12	37	1.83
27161--29542	685	3.5	682	81	4	2389	35	13	12	37	1.83
31687--31725	18	2.0	20	90	9	64	53	12	0	33	1.39
35037--36919	171	11.0	168	72	9	1010	37	11	14	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35212--35892	343	2.0	343	80	4	773	36	12	14	36	1.84
35280--36496	512	2.4	513	85	3	1594	37	12	14	36	1.83
35280--36917	341	4.8	337	74	8	1176	38	11	14	36	1.82
35280--36919	512	3.2	503	80	6	1584	38	11	14	36	1.82
36117--36869	335	2.2	334	78	7	802	38	11	13	36	1.81

Tables:   1

The End!