genome.fa.s103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397356.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2830.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41300

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--328	171	1.8	170	81	4	393	37	12	14	31	1.84
2295--3134	171	4.9	171	77	3	771	36	15	12	32	1.85
3365--4653	171	7.5	169	73	5	777	30	12	13	37	1.83
4759--5104	170	2.0	171	80	1	390	31	13	15	35	1.87
5899--6218	170	1.9	160	84	4	347	30	13	14	38	1.84
5894--6591	171	4.1	171	76	3	627	31	14	14	36	1.86
8150--9084	170	5.5	171	81	3	936	33	13	13	40	1.83
8280--9084	341	2.4	341	83	3	985	32	13	13	40	1.84
9185--10364	171	6.9	171	81	2	1255	38	14	13	33	1.85
10221--10510	143	2.0	142	80	4	325	40	13	11	35	1.80
10363--10872	170	3.0	170	85	4	636	38	13	12	34	1.83
9956--10847	483	1.8	482	83	3	1177	39	13	12	34	1.81
11658--11770	52	2.2	52	87	3	156	21	20	20	38	1.94
14030--15482	171	8.5	170	78	5	1350	37	13	14	32	1.85
14030--15414	511	2.7	511	81	4	1501	37	13	14	32	1.85
14030--15484	682	2.1	679	80	5	1612	37	13	14	32	1.85
15952--16860	170	5.3	169	74	6	701	37	13	13	31	1.84
17861--19523	171	9.7	171	81	4	1745	33	13	13	38	1.85
17861--19523	682	2.4	677	82	4	1900	33	13	13	38	1.85
20330--20768	171	2.5	168	82	6	481	34	15	13	35	1.87
20376--20768	172	2.3	170	83	3	477	34	14	12	37	1.85
20910--25012	171	23.8	171	77	6	3528	33	12	13	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22148--22217	32	2.2	32	97	0	131	27	5	8	58	1.50
21975--22384	203	2.0	203	84	1	536	33	10	14	41	1.80
25547--26894	170	7.9	170	77	6	1232	34	13	13	38	1.84
25547--31749	342	18.1	338	69	10	2010	33	12	13	37	1.82
25547--31750	513	12.1	507	68	9	1637	33	12	13	37	1.82
27003--29550	171	14.9	171	75	5	1911	33	12	13	37	1.83
27012--31750	513	9.3	504	72	9	2238	33	12	13	37	1.83
29615--31750	170	12.5	170	80	4	1850	34	13	13	38	1.84
32320--33373	171	6.2	167	81	4	1069	33	13	14	38	1.85
32320--33366	343	3.1	340	83	4	1202	33	13	14	38	1.85
32320--33364	514	2.0	511	82	4	1275	33	13	14	38	1.86
35066--36245	171	6.9	170	74	6	903	32	11	13	38	1.82
36847--39277	171	14.3	170	79	6	2185	33	13	14	38	1.84
36847--39277	511	4.8	508	80	5	2431	33	13	14	38	1.84

Tables:   1

The End!