genome.fa.s104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397357.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_283.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40946

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1454	171	8.5	171	81	3	1525	38	14	13	32	1.85
5431--6142	171	4.2	171	74	5	409	37	14	13	33	1.84
5500--6132	342	1.9	332	80	2	669	36	14	13	34	1.86
6601--11190	171	26.8	170	78	6	3798	34	13	13	37	1.85
11439--11850	171	2.4	171	82	4	474	35	13	13	38	1.83
12336--15719	341	9.9	340	79	4	2887	33	13	13	38	1.84
12338--15719	171	19.8	171	79	2	3201	33	13	13	38	1.85
12328--15719	512	6.6	511	81	3	3276	33	13	13	38	1.84
16777--18637	171	10.9	169	80	4	1760	37	14	14	33	1.86
19146--20714	171	9.2	171	82	3	1666	39	13	13	33	1.84
19143--25038	341	17.2	340	72	11	2546	38	13	14	32	1.85
21359--24073	171	15.9	170	78	4	2318	37	13	13	32	1.85
21359--25038	342	10.8	341	78	5	3407	38	13	13	32	1.85
23921--24224	151	2.0	152	84	1	396	40	11	14	32	1.83
24073--25038	171	5.7	170	83	3	1115	39	13	13	33	1.84
24795--25298	260	1.9	260	90	0	792	43	12	10	32	1.78
25051--25583	170	3.1	170	84	5	686	39	13	14	33	1.85
24625--25468	430	2.0	430	86	1	1192	41	13	11	33	1.81
25581--26181	171	3.5	171	87	2	801	39	13	13	33	1.84
27094--28429	171	7.8	170	83	4	1564	38	14	13	33	1.86
27112--28429	341	3.9	340	83	3	1592	38	14	14	32	1.86
27094--28425	512	2.6	508	85	4	1741	38	14	13	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29645--30467	171	4.8	167	79	6	755	38	13	13	34	1.84
29645--30468	341	2.4	340	79	6	939	38	13	13	34	1.84
32047--32378	170	2.0	170	88	0	493	39	13	12	34	1.83
32297--32466	90	1.9	90	88	0	259	53	11	2	32	1.49
32129--32632	260	1.9	260	85	1	697	42	13	10	31	1.77
33112--33665	175	3.2	172	81	2	623	39	12	12	33	1.82
35328--36528	171	7.1	171	82	3	1343	39	15	13	31	1.86
35328--37846	340	7.5	341	74	9	1922	39	15	13	32	1.86
36573--37844	171	7.4	170	82	4	1416	39	14	12	32	1.84
36573--37846	341	3.7	339	82	3	1473	39	14	12	32	1.84
37950--38530	171	3.4	170	79	5	636	39	14	13	32	1.84
40370--40946	169	3.4	170	87	4	785	38	14	13	34	1.85

Tables:   1

The End!