genome.fa.s105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397358.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_576.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40964

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3880	171	22.7	169	72	7	2143	38	12	12	34	1.81
1076--3880	341	8.2	335	75	6	1293	38	11	12	34	1.81
4754--5974	171	7.1	171	75	7	931	34	13	12	38	1.83
4894--5977	342	3.2	336	78	8	1032	34	14	12	38	1.84
4754--5971	513	2.4	512	79	5	1176	34	13	12	38	1.83
14037--15152	170	6.5	171	81	4	1124	38	13	12	35	1.82
14067--15152	341	3.2	338	82	5	1188	39	13	12	35	1.82
15382--15842	171	2.7	168	78	6	464	42	11	11	33	1.78
16356--21646	171	31.2	170	74	7	3428	35	13	12	38	1.82
16356--21633	342	15.5	339	77	7	3856	35	13	12	38	1.82
18530--18839	161	1.9	161	81	6	369	38	12	10	38	1.78
21819--23144	342	3.9	337	78	8	1156	35	12	11	39	1.80
21830--23144	170	7.7	170	77	8	1156	35	12	11	40	1.80
23245--31096	171	46.4	171	75	7	5486	39	12	13	34	1.82
31763--31997	35	6.7	35	72	3	161	42	14	7	31	1.73
31763--31956	106	1.8	106	80	2	237	40	14	7	32	1.74
31896--31997	36	3.0	35	85	5	120	47	14	6	31	1.71
33414--35223	171	10.6	168	75	9	1093	38	12	13	35	1.82
33137--35351	342	6.6	339	76	10	1578	38	12	13	35	1.82
33159--35080	683	2.8	676	78	8	1761	39	12	13	34	1.83
35689--40432	342	13.8	342	76	6	3372	34	14	12	37	1.83
35689--39306	171	21.2	170	76	5	2696	34	14	12	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39258--39354	48	2.0	49	85	2	133	40	18	14	26	1.89
39373--40433	171	6.2	169	75	6	735	36	14	11	37	1.82
40372--40487	55	2.1	56	90	4	182	31	11	12	44	1.78
40209--40658	226	2.0	227	83	5	563	33	14	10	41	1.80
40430--40964	170	3.1	169	82	4	605	34	15	11	38	1.83

Tables:   1

The End!