genome.fa.s1059.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398312.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1613.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15416

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022--2109	341	3.2	341	74	9	745	34	14	13	38	1.85
509--2144	512	3.2	503	77	6	1412	34	13	12	38	1.84
856--2126	683	1.9	681	78	5	1422	34	13	13	38	1.84
1554--2200	341	1.9	342	81	5	781	35	15	12	36	1.85
509--2479	171	11.5	169	72	6	1056	33	13	12	38	1.83
2653--4387	171	10.2	171	74	6	1175	34	13	13	38	1.84
3426--3732	170	1.8	171	84	2	420	32	12	12	42	1.79
2749--4381	341	4.8	339	74	7	774	34	13	13	38	1.84
4603--6909	171	13.5	170	75	7	1586	38	13	13	34	1.83
4620--6908	341	6.7	336	76	7	1532	38	13	13	34	1.83
9471--11749	171	13.4	171	75	7	1456	37	13	14	34	1.84
9471--11749	341	6.7	342	75	6	1697	37	13	14	34	1.84
9741--11726	512	3.9	506	78	6	1571	38	12	13	34	1.84
13200--13833	341	1.9	338	82	4	812	36	13	15	34	1.87
13200--14286	341	3.2	338	77	8	785	38	12	15	33	1.85
13135--14767	171	9.6	170	75	5	1223	37	13	14	34	1.85

Tables:   1

The End!