Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397359.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_125.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40393

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--365
21
1.9
21
84
0
53
32
15
12
40
1.84
1164--1211
22
2.2
22
77
3
53
58
4
0
37
1.18
7602--8545
344
2.8
338
80
4
1031
34
13
12
39
1.82
7602--8614
172
5.9
171
77
6
935
34
13
12
39
1.83
23311--29195
171
34.5
170
72
6
2762
37
11
13
34
1.82
26212--26249
20
1.9
20
89
10
60
26
18
13
42
1.87
23302--32987
341
28.5
336
71
9
4269
38
12
13
34
1.82
29055--29342
143
2.0
144
81
4
341
35
12
14
36
1.85
29193--32984
170
22.1
170
74
8
2154
39
12
13
34
1.82
35909--36268
170
2.1
170
82
4
449
33
12
13
40
1.82
40342--40376
15
2.2
16
95
5
63
57
0
0
42
0.99

Tables:   1

The End!