genome.fa.s1066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398319.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_162.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47102

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3266--3896	171	3.7	172	75	5	454	35	13	12	35	1.82
4567--6064	172	8.8	170	72	5	831	36	12	12	35	1.81
6168--7675	172	8.9	170	77	7	1237	37	12	12	36	1.82
6174--7675	343	4.4	341	77	8	1364	37	12	12	36	1.82
7776--8186	172	2.4	171	82	1	491	37	13	12	36	1.83
11533--11926	171	2.3	169	73	5	364	38	12	10	36	1.78
12770--13472	171	4.1	170	80	8	736	38	12	12	35	1.81
12770--13476	340	2.1	341	81	6	828	39	12	12	35	1.81
17753--19448	171	9.9	169	77	8	1360	36	13	11	38	1.81
17775--19191	515	2.8	514	79	7	1324	36	13	11	38	1.81
25146--25647	172	3.0	166	78	9	514	35	12	12	35	1.81
26978--28106	171	6.7	171	76	7	988	36	13	11	38	1.81
27299--27578	153	1.8	153	83	3	368	34	13	11	41	1.80
27107--27728	324	1.9	324	82	4	772	34	14	10	40	1.80
27433--28106	172	3.9	169	77	6	610	35	14	11	38	1.82
30605--32322	172	10.1	170	79	4	1309	37	12	12	36	1.82
30754--32162	342	4.1	339	79	5	969	37	13	12	36	1.82
35372--37418	171	12.0	169	77	6	1746	35	13	12	37	1.83
35372--37384	855	2.4	852	82	5	2405	35	13	12	37	1.83
38577--39172	171	3.5	171	83	2	610	35	13	13	36	1.84
40669--43569	341	8.4	340	72	9	1528	37	12	13	35	1.82
40669--43740	171	17.8	170	72	8	1636	37	12	13	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42251--42331	41	2.0	41	97	0	153	46	13	6	33	1.68
44019--44408	212	1.9	202	81	2	388	37	13	11	32	1.80
44795--45110	171	1.9	161	78	8	328	34	12	14	35	1.84

Tables:   1

The End!