genome.fa.s107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397360.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_58.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39873

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3828	171	22.4	171	76	6	2805	38	11	13	35	1.81
1--3828	514	7.5	508	76	7	2843	38	11	13	35	1.81
6032--10036	171	23.2	171	72	8	1769	35	13	11	39	1.80
5911--10036	343	12.0	344	73	10	2400	35	13	11	39	1.80
5911--9946	514	7.8	511	72	11	1351	35	13	11	39	1.80
7080--7392	158	2.0	158	81	5	373	35	12	11	40	1.80
8487--8773	154	1.9	153	83	6	377	33	12	9	44	1.74
11663--13690	171	11.8	171	76	5	1608	35	13	12	37	1.82
11666--13320	514	3.2	509	79	5	1783	36	14	11	37	1.82
11666--13690	341	5.9	341	77	4	1712	35	13	12	37	1.82
13870--14398	171	3.1	170	82	6	597	34	14	12	38	1.84
15780--16710	171	5.6	171	76	6	524	34	14	11	37	1.82
16448--16806	169	2.1	168	82	11	430	34	15	11	38	1.84
17007--17714	171	4.1	171	73	5	469	34	12	12	37	1.81
18784--22359	171	20.9	171	78	4	3183	36	13	11	38	1.81
23989--31486	171	44.2	169	74	8	4547	35	13	12	38	1.82
23989--31438	513	14.6	511	76	7	5833	35	13	11	38	1.82
23989--31486	342	22.1	341	76	6	5983	35	13	12	38	1.82
29511--31438	340	5.7	338	79	7	1884	35	13	11	39	1.81
32634--32678	21	2.1	21	100	0	90	40	20	17	22	1.92
33852--34173	172	2.0	156	87	1	340	35	10	15	33	1.82
33689--34919	170	7.2	170	74	4	737	37	11	13	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35232--39873	171	27.1	171	72	6	2489	37	11	13	34	1.81
36432--36533	52	2.0	52	90	0	159	25	22	12	39	1.90
36662--37304	343	1.9	338	83	2	847	38	11	12	37	1.79

Tables:   1

The End!