genome.fa.s108.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397361.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1318.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39849

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200--1229	4	7.5	4	92	0	51	0	30	0	70	0.88
3643--6256	171	15.3	170	80	4	2476	35	14	12	38	1.84
3643--6256	341	7.7	341	80	4	2528	35	14	12	38	1.84
5631--5678	22	2.2	22	84	0	60	29	2	10	58	1.43
6863--7229	171	2.1	172	79	6	395	35	12	11	40	1.79
9183--20460	171	66.1	171	77	4	8664	34	13	12	38	1.83
8716--27159	342	54.0	341	74	6	10878	34	13	12	38	1.82
12907--12948	17	2.5	17	100	0	84	40	4	19	35	1.72
20962--23312	171	13.8	171	76	7	1598	34	14	12	38	1.84
23328--27159	171	22.5	170	78	4	3160	34	13	12	38	1.83
28706--28731	12	2.2	12	100	0	52	23	26	15	34	1.94
28724--29087	170	2.1	172	79	7	409	35	14	12	38	1.83
30825--30868	21	2.0	22	86	4	63	61	9	0	29	1.27
31108--32733	171	9.5	169	79	6	1467	34	13	12	39	1.83
31096--32733	342	4.8	338	80	5	1666	34	13	12	39	1.83
31108--32733	513	3.2	502	81	6	1723	34	13	12	39	1.83
33375--34333	172	5.6	170	76	10	492	34	13	11	40	1.81
33241--39837	171	38.7	171	77	6	4531	34	13	12	39	1.83
33241--39837	342	19.4	341	77	5	5397	34	13	12	39	1.83
33241--39849	513	12.9	512	78	4	5404	34	13	12	39	1.83

Tables:   1

The End!