genome.fa.s109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397362.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2260.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39683

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1200	171	7.0	171	74	7	947	37	10	13	34	1.80
1930--2245	171	1.9	160	89	3	413	37	11	13	33	1.81
10768--11365	171	3.5	168	77	6	523	38	10	12	36	1.78
13981--16077	171	12.3	169	74	7	1053	36	10	13	35	1.79
13981--15883	513	3.7	503	76	8	1248	36	10	14	35	1.80
13975--15850	342	5.5	339	76	5	1234	36	10	14	35	1.80
14930--15883	512	1.9	500	80	3	1042	36	11	15	35	1.83
18607--19052	170	2.6	161	79	9	412	34	15	10	34	1.82
20027--21102	170	6.3	171	73	5	845	36	12	11	37	1.79
20025--20845	342	2.4	333	75	10	750	36	12	11	36	1.80
21409--22052	171	3.8	171	78	3	528	35	12	11	36	1.81
22981--25080	170	12.3	158	68	17	476	35	13	10	36	1.79
22326--25428	341	9.2	338	75	6	1825	34	13	10	37	1.79
22531--25910	171	19.8	171	72	6	1914	35	12	10	36	1.79
26011--26378	171	2.2	171	76	2	407	36	10	14	36	1.80
26717--27756	171	6.1	171	80	5	838	37	11	13	33	1.81
26736--27409	343	2.0	321	76	12	738	36	11	13	32	1.82
27246--27843	171	3.5	169	79	5	528	36	11	14	35	1.83
28084--29386	171	7.6	167	71	6	563	37	9	12	34	1.76
29369--29400	14	2.3	14	94	0	55	34	6	25	34	1.81
29309--29488	97	1.9	97	82	5	222	47	6	13	32	1.68
29407--32193	171	16.4	171	72	7	1298	37	9	13	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29404--32513	171	18.3	170	72	8	1283	37	10	13	35	1.78
29409--32340	510	5.7	510	73	6	1807	37	10	13	35	1.79
33292--33603	170	1.9	160	86	4	369	36	10	15	34	1.81
32803--34230	171	8.4	170	74	7	984	36	10	13	35	1.80
35579--36856	171	7.5	171	79	8	1227	38	11	13	36	1.81
37607--39103	170	8.8	170	70	6	612	36	11	12	34	1.79

Tables:   1

The End!