Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398349.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1648.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43666

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
854--1176
170
1.9
170
80
5
366
36
10
15
34
1.82
1873--2178
172
1.8
162
82
5
298
36
12
11
36
1.80
4355--4901
170
3.2
170
82
4
597
36
14
9
40
1.78
7531--8056
171
3.1
168
75
8
506
36
11
14
35
1.83
16614--16666
26
2.0
26
100
0
106
39
7
11
41
1.69
16817--17208
171
2.3
170
77
5
380
36
13
12
35
1.82
18659--19569
170
5.4
170
73
5
615
35
13
9
37
1.77
21971--22337
169
2.2
170
83
4
447
39
10
14
34
1.81
27454--27841
171
2.3
169
79
9
414
35
13
11
38
1.81
29294--29687
172
2.3
158
77
12
344
37
12
9
38
1.76
29294--29831
169
3.2
166
79
7
481
36
13
10
37
1.78
31386--31823
171
2.6
166
76
9
386
35
11
13
35
1.80
35441--35852
171
2.4
171
79
3
472
34
14
10
38
1.80
37643--38060
171
2.4
168
82
7
486
36
13
11
38
1.81
41551--42825
171
7.5
172
72
8
742
35
11
12
34
1.80
42123--42825
340
2.1
336
81
6
799
36
11
12
35
1.80

Tables:   1

The End!