Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397367.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1441.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36276

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--529
170
3.1
168
77
7
462
36
12
10
38
1.78
656--1389
173
4.3
171
74
4
632
34
12
11
35
1.80
1920--2934
171
5.9
170
73
8
733
34
13
11
37
1.80
1920--3861
170
11.4
170
74
4
798
33
13
10
37
1.80
5650--5967
172
1.9
161
86
3
370
39
12
10
34
1.77
5620--6142
171
3.1
169
78
6
506
39
12
12
34
1.80
6368--13966
171
44.4
172
75
6
4976
38
11
13
34
1.81
6368--13965
341
22.2
338
74
7
4713
38
11
13
34
1.81
15192--15753
172
3.3
169
76
5
488
38
11
12
34
1.78
16303--17502
170
7.1
170
78
5
1021
34
13
11
39
1.82
16411--18153
509
3.5
506
75
10
1256
34
13
12
39
1.82
17385--17643
141
1.8
141
83
4
344
36
17
13
32
1.89
17512--18157
172
3.8
167
77
6
491
34
13
12
39
1.82
16920--18151
649
1.9
644
80
6
1448
34
13
12
39
1.82
19124--19458
170
2.0
170
85
5
455
42
13
12
32
1.81
19124--19675
170
3.2
168
75
7
436
40
12
12
32
1.80
18881--20836
172
11.5
172
70
7
673
38
11
12
32
1.79
25670--28461
171
16.3
170
79
6
2459
35
14
11
38
1.83
30798--31116
170
1.9
170
84
5
430
35
13
9
42
1.77
32978--33547
171
3.3
170
80
6
618
38
10
15
35
1.81
34435--34773
171
2.1
159
72
19
298
38
12
12
33
1.82

Tables:   1

The End!