genome.fa.s115.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397368.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1574.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36248

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438--994	171	3.3	168	81	4	663	38	11	14	35	1.83
731--1053	171	1.9	167	82	2	394	38	11	15	34	1.83
1149--3964	171	16.6	171	76	6	2138	38	13	13	34	1.83
1149--3964	341	8.3	339	77	6	2081	38	13	13	34	1.83
4079--4461	172	2.2	171	80	5	434	33	15	11	39	1.83
4572--4969	171	2.3	169	81	4	451	33	12	13	40	1.83
5020--5428	171	2.4	172	80	5	470	32	15	15	37	1.89
5939--7010	170	6.3	168	79	5	965	33	14	13	38	1.85
5939--7010	340	3.1	336	80	6	1086	33	14	13	38	1.85
7287--9236	171	11.4	170	80	3	1758	34	13	13	38	1.85
7287--9236	340	5.7	340	77	5	1779	34	13	13	38	1.85
9181--9225	22	2.0	22	83	8	56	35	4	11	48	1.59
9629--10460	171	4.9	171	78	3	737	34	13	13	38	1.84
10871--12062	171	7.0	170	77	5	990	35	14	13	37	1.85
12729--18035	171	31.0	171	77	5	3851	38	13	13	33	1.85
12729--18033	857	6.2	848	77	6	4128	38	13	13	33	1.85
22011--23291	171	7.5	170	76	6	937	38	13	14	33	1.85
22011--23291	339	3.7	342	76	7	955	38	13	14	33	1.85
27963--30288	171	13.6	171	77	5	1837	38	13	14	34	1.85
27963--30297	343	6.8	340	75	7	1941	38	13	14	34	1.85
33706--35522	170	10.6	171	77	5	1458	34	14	13	37	1.86
33699--35525	345	5.4	341	77	5	1474	33	14	13	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33696--35524	171	10.7	170	77	5	1425	33	14	13	37	1.86

Tables:   1

The End!