genome.fa.s1156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398409.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1708.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46759

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1073	171	6.3	168	79	9	869	38	13	12	35	1.82
1--1095	342	3.2	340	79	7	972	38	12	13	35	1.83
1020--1240	122	1.8	122	83	2	282	34	13	18	33	1.90
1142--4812	171	21.6	171	76	6	2564	38	12	13	35	1.83
462--1926	806	1.8	804	82	2	1873	39	13	12	34	1.82
1142--4812	852	4.3	840	77	7	2902	38	12	13	35	1.83
4735--4899	88	1.9	88	85	2	233	35	13	18	31	1.90
4820--6898	171	12.2	171	77	5	1619	38	12	14	34	1.84
4820--6898	342	6.1	341	77	5	1801	38	12	14	34	1.84
3891--5694	933	1.9	930	78	6	1903	37	12	14	35	1.83
4820--6898	513	4.1	505	78	5	1858	38	12	14	34	1.84
8731--12713	171	23.4	170	75	7	2674	39	12	13	35	1.82
17792--18441	170	3.8	167	78	7	612	38	12	13	35	1.83
20627--22945	171	13.6	170	78	5	1921	39	12	14	34	1.83
20625--22948	513	4.5	513	78	5	2118	39	12	14	34	1.83
25524--26105	171	3.4	167	78	7	519	39	12	13	35	1.81
27930--28912	340	2.9	342	78	5	846	37	12	13	36	1.83
27846--29250	171	8.2	170	74	6	973	36	11	14	35	1.83
30501--34938	171	26.0	169	75	6	2833	37	12	14	35	1.84
30501--34933	513	8.7	509	79	6	3760	37	12	14	35	1.84
30501--34930	342	13.0	340	77	6	3684	37	12	14	35	1.84
37174--37218	19	2.4	19	96	0	81	26	13	11	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41291--41334	20	2.2	20	91	0	70	36	25	4	34	1.76

Tables:   1

The End!